RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 NSMCE1Q8WV22 266 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 TBC1D31Q96DN5 1066 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 GSDMAQ96QA5 445 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 SPAG5Q96R06 1193 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 EBF2Q9HAK2 575 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 ZNF302Q9NR11 478 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 DISC1Q9NRI5 854 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 CXXC1Q9P0U4 656 aaPredicted RBP8.27□□□□□ -1.09
LIMA1-216ENST00000552909 GABBR1Q9UBS5 961 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 MAFBQ9Y5Q3 323 aaPredicted RBP8.27□□□□□ -1.09
LIMA1-216ENST00000552909 MYO9BQ13459 2157 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 EVPLQ92817 2033 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 NRCAMQ92823 1304 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 POTEB3A0JP26 581 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 GOLGA6L10A6NI86 522 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 ZBTB42B2RXF5 422 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 KCNJ18B7U540 433 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 PITPNM1O00562 1244 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 LONP1P36776 959 aaKnown RBP8.26□□□□□ -1.09
LIMA1-216ENST00000552909 THPOP40225 353 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 PRPHP41219 470 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 MRPS25P82663 173 aaKnown RBP8.26□□□□□ -1.09
LIMA1-216ENST00000552909 KIF5AQ12840 1032 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 MYO1EQ12965 1108 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 PAK2Q13177 524 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 PPIGQ13427 754 aaKnown RBP eCLIP8.26□□□□□ -1.09
LIMA1-216ENST00000552909 KCNJ12Q14500 433 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 SPRED3Q2MJR0 410 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 TCP11X2Q5H9J9 407 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 FAM109BQ6ICB4 259 aaPredicted RBP8.26□□□□□ -1.09
LIMA1-216ENST00000552909 CAPRIN2Q6IMN6 1127 aaKnown RBP8.26□□□□□ -1.09
LIMA1-216ENST00000552909 MIS18BP1Q6P0N0 1132 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 POTEBQ6S5H4 581 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 CRELD2Q6UXH1 353 aaPredicted RBP8.26□□□□□ -1.09
LIMA1-216ENST00000552909 BZW1Q7L1Q6 419 aaKnown RBP8.26□□□□□ -1.09
LIMA1-216ENST00000552909 OTOP2Q7RTS6 562 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 CACNA2D3Q8IZS8 1091 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 TRIM58Q8NG06 486 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 PARD3BQ8TEW8 1205 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 MTMR9Q96QG7 549 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 TEKT3Q9BXF9 490 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 TSGA10Q9BZW7 698 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 LACRTQ9GZZ8 138 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 SLC39A2Q9NP94 309 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 IL23AQ9NPF7 189 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 BAIAP2L1Q9UHR4 511 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 VAV3Q9UKW4 847 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 TRPC6Q9Y210 931 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 SH3BP1Q9Y3L3 701 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 TRANK1O15050 2925 aa8.26□□□□□ -1.09
LIMA1-216ENST00000552909 A0A1W2PPC1 479 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 TMEM150BA6NC51 233 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 PP2D1A8MPX8 630 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 WDR64B1ANS9 1081 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 NBNO60934 754 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 AP1G2O75843 785 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 PSAPP07602 524 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 CTSHP09668 335 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 GHRP10912 638 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 PECAM1P16284 738 aaPredicted RBP8.25□□□□□ -1.09
LIMA1-216ENST00000552909 PRLRP16471 622 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 TCP1P17987 556 aaKnown RBP8.25□□□□□ -1.09
LIMA1-216ENST00000552909 HPDP32754 393 aaPredicted RBP8.25□□□□□ -1.09
LIMA1-216ENST00000552909 ELF3P78545 371 aaPredicted RBP8.25□□□□□ -1.09
LIMA1-216ENST00000552909 ORC2Q13416 577 aaPredicted RBP8.25□□□□□ -1.09
LIMA1-216ENST00000552909 BFSP2Q13515 415 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 TCTN1Q2MV58 587 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 WDR59Q6PJI9 974 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 MREGQ8N565 214 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 RETREG2Q8NC44 543 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 CCHCR1Q8TD31 782 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 TCP11Q8WWU5 503 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 STAMBPL1Q96FJ0 436 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 THOC1Q96FV9 657 aaKnown RBP8.25□□□□□ -1.09
LIMA1-216ENST00000552909 PAGE5Q96GU1 130 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 SEC16BQ96JE7 1060 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 FAM210AQ96ND0 272 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 NAP1L4Q99733 375 aaKnown RBP8.25□□□□□ -1.09
LIMA1-216ENST00000552909 SH2D3AQ9BRG2 576 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 ZNHIT6Q9NWK9 470 aaKnown RBP8.25□□□□□ -1.09
LIMA1-216ENST00000552909 RWDD2AQ9UIY3 292 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 CAPN11Q9UMQ6 739 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 C15orf41Q9Y2V0 281 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 A0A087X0B3 334 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 MBLAC1A4D2B0 266 aaPredicted RBP8.25□□□□□ -1.09
LIMA1-216ENST00000552909 RCCD1A6NED2 376 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 ENO4A6NNW6 628 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 TRAPPC3O43617 180 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 ATP2C2O75185 946 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 TACC1O75410 805 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 GNAT1P11488 350 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 SELPP16109 830 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 UBA7P41226 1012 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 PAFAH1B1P43034 410 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 SPIRE1Q08AE8 756 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 DPYDQ12882 1025 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 LRIT3Q3SXY7 679 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 FKBP15Q5T1M5 1219 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 FAM160B1Q5W0V3 765 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 LRRC8DQ7L1W4 858 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms