RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 MRGPRGQ86SM5 289 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 ERO1BQ86YB8 467 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 FUKQ8N0W3 1084 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 DTX3Q8N9I9 347 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 LINS1Q8NG48 757 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 FRS2Q8WU20 508 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 ATXN2LQ8WWM7 1075 aaKnown RBP4.48□□□□□ -1.69
LIMA1-206ENST00000550611 NEIL1Q96FI4 390 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-206ENST00000550611 FAM84BQ96KN1 310 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-206ENST00000550611 AGAP2Q99490 1192 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 TMEM39BQ9GZU3 492 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 KATNBL1Q9H079 304 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 C11orf49Q9H6J7 331 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 CYP26B1Q9NR63 512 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 ZNF112Q9UJU3 913 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 PCDHB10Q9UN67 800 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 SLC30A1Q9Y6M5 507 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 PFASO15067 1338 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 MYBBP1AQ9BQG0 1328 aaKnown RBP4.47□□□□□ -1.69
LIMA1-206ENST00000550611 CHD9Q3L8U1 2897 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 ANKRD34BA5PLL1 514 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 TCP10L2B9ZVM9 353 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 SMIM22K7EJ46 135 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 KCNH1O95259 989 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 CAPN2P17655 700 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 LMO1P25800 156 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 HOXD10P28358 340 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 BCL6P41182 706 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 KCNJ4P48050 445 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 FLT3LGP49771 235 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 KCNQ1P51787 676 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 RBM5P52756 815 aaKnown RBP eCLIP4.47□□□□□ -1.69
LIMA1-206ENST00000550611 PPATQ06203 517 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 IFIT5Q13325 482 aaKnown RBP4.47□□□□□ -1.69
LIMA1-206ENST00000550611 PPIL2Q13356 520 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 SNAPC2Q13487 334 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 UBE4AQ14139 1066 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 EPHA10Q5JZY3 1008 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 FNDC7Q5VTL7 733 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 FKBP1CQ5VVH2 108 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 APOBEC3HQ6NTF7 200 aaKnown RBP4.47□□□□□ -1.69
LIMA1-206ENST00000550611 POLNQ7Z5Q5 900 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 ANKRD23Q86SG2 305 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 FAM83AQ86UY5 434 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 IL17DQ8TAD2 202 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 PHOSPHO1Q8TCT1 267 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 DNAAF4Q8WXU2 420 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 LARP4BQ92615 738 aaKnown RBP4.47□□□□□ -1.69
LIMA1-206ENST00000550611 ZKSCAN4Q969J2 545 aaPredicted RBP4.47□□□□□ -1.69
LIMA1-206ENST00000550611 PLEKHG4BQ96PX9 1271 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 DMRT1Q9Y5R6 373 aa4.47□□□□□ -1.69
LIMA1-206ENST00000550611 DCHS1Q96JQ0 3298 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 SPTBN4Q9H254 2564 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 LAMB1P07942 1786 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 A0A1W2PQH9 124 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 H7BY64 318 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 SCAMP3O14828 347 aaKnown RBP4.46□□□□□ -1.7
LIMA1-206ENST00000550611 WDHD1O75717 1129 aaPredicted RBP4.46□□□□□ -1.7
LIMA1-206ENST00000550611 MAKP20794 623 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 FBLP22087 321 aaKnown RBP4.46□□□□□ -1.7
LIMA1-206ENST00000550611 ACRV1P26436 265 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 ERCC5P28715 1186 aaPredicted RBP4.46□□□□□ -1.7
LIMA1-206ENST00000550611 HIBADHP31937 336 aaKnown RBP4.46□□□□□ -1.7
LIMA1-206ENST00000550611 GYG1P46976 350 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 CYP4F3Q08477 520 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 KCNAB2Q13303 367 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 TUBA3CQ13748 450 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 COL9A2Q14055 689 aaPredicted RBP4.46□□□□□ -1.7
LIMA1-206ENST00000550611 WDR43Q15061 677 aaKnown RBP eCLIP4.46□□□□□ -1.7
LIMA1-206ENST00000550611 TESK1Q15569 626 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 MFSD14BQ5SR56 506 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 BEND3Q5T5X7 828 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 TUBA3EQ6PEY2 450 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 LMBR1LQ6UX01 489 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 LDHAL6AQ6ZMR3 332 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 PROSER1Q86XN7 944 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 BVESQ8NE79 360 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 UIMC1Q96RL1 719 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 PRRX2Q99811 253 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.46□□□□□ -1.7
LIMA1-206ENST00000550611 MYH16Q9H6N6 1097 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 APEX2Q9UBZ4 518 aa4.46□□□□□ -1.7
LIMA1-206ENST00000550611 COL2A1P02458 1487 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-206ENST00000550611 DMDP11532 3685 aa4.45□□□□□ -1.7
LIMA1-206ENST00000550611 PDHXO00330 501 aa4.45□□□□□ -1.7
LIMA1-206ENST00000550611 CXCL11O14625 94 aa4.45□□□□□ -1.7
LIMA1-206ENST00000550611 CACNB3P54284 484 aa4.45□□□□□ -1.7
LIMA1-206ENST00000550611 RAC3P60763 192 aa4.45□□□□□ -1.7
LIMA1-206ENST00000550611 USP10Q14694 798 aaKnown RBP4.45□□□□□ -1.7
LIMA1-206ENST00000550611 TWISTNBQ3B726 338 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-206ENST00000550611 GTF2IRD2BQ6EKJ0 949 aa4.45□□□□□ -1.7
LIMA1-206ENST00000550611 VASNQ6EMK4 673 aa4.45□□□□□ -1.7
LIMA1-206ENST00000550611 GTF2IRD2Q86UP8 949 aa4.45□□□□□ -1.7
LIMA1-206ENST00000550611 CCDC103Q8IW40 242 aa4.45□□□□□ -1.7
LIMA1-206ENST00000550611 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-206ENST00000550611 ZNF483Q8TF39 744 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-206ENST00000550611 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.45□□□□□ -1.7
LIMA1-206ENST00000550611 DIO2Q92813 273 aa4.45□□□□□ -1.7
LIMA1-206ENST00000550611 TSR2Q969E8 191 aaKnown RBP4.45□□□□□ -1.7
LIMA1-206ENST00000550611 KAZALD1Q96I82 304 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms