RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 BARX2Q9UMQ3 279 aaPredicted RBP12.93□□□□□ -0.34
HDAC4-216ENST00000544989 HCN4Q9Y3Q4 1203 aa12.93□□□□□ -0.34
HDAC4-216ENST00000544989 TDRD15B5MCY1 1934 aaKnown RBP12.93□□□□□ -0.34
HDAC4-216ENST00000544989 NPHP3-ACAD11A0A0J9YXS1 232 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 PTGESO14684 152 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 HNRNPDLO14979 420 aaKnown RBP12.92□□□□□ -0.34
HDAC4-216ENST00000544989 TRAPPC3O43617 180 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 CUTAO60888 179 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 EFEMP2O95967 443 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 EDN1P05305 212 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 SSTR3P32745 418 aaPredicted RBP12.92□□□□□ -0.34
HDAC4-216ENST00000544989 MATR3P43243 847 aaKnown RBP eCLIP12.92□□□□□ -0.342e-6■■■■□ 20.3
HDAC4-216ENST00000544989 LIG4P49917 911 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 AMPD3Q01432 767 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 DSG1Q02413 1049 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 ZP2Q05996 745 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 MCL1Q07820 350 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 BECN1Q14457 450 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 CLUL1Q15846 466 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 SPECC1Q5M775 1068 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 FUT10Q6P4F1 479 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 RNF168Q8IYW5 571 aaPredicted RBP12.92□□□□□ -0.34
HDAC4-216ENST00000544989 NECTIN4Q96NY8 510 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 PYM1Q9BRP8 204 aaKnown RBP12.92□□□□□ -0.34
HDAC4-216ENST00000544989 VN1R3Q9BXE9 311 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 ZHX3Q9H4I2 956 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 EPHX3Q9H6B9 360 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 PLEKHA5Q9HAU0 1116 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 C11orf16Q9NQ32 467 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 ANKFY1Q9P2R3 1169 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 TBX20Q9UMR3 447 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 ATP6V1DQ9Y5K8 247 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 HCFC2Q9Y5Z7 792 aa12.92□□□□□ -0.34
HDAC4-216ENST00000544989 TMEM189-UBE2V1I3L0A0 370 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 LILRB3O75022 631 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 PIGRP01833 764 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 KCNE1P15382 129 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 KLRC2P26717 231 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 GTF2BQ00403 316 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 CACNB1Q02641 598 aaPredicted RBP12.91□□□□□ -0.34
HDAC4-216ENST00000544989 ALCAMQ13740 583 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 XKR4Q5GH76 650 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 SLFN12LQ6IEE8 588 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 LLGL2Q6P1M3 1020 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 DCLRE1AQ6PJP8 1040 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 ALKAL1Q6UXT8 129 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 USP49Q70CQ1 688 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 ZBTB33Q86T24 672 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 IQUBQ8NA54 791 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 VN1R2Q8NFZ6 395 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 SUSD6Q92537 303 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 DDX12PQ92771 950 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 RIPOR3Q96MK2 946 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 NECAB3Q96P71 396 aaPredicted RBP12.91□□□□□ -0.34
HDAC4-216ENST00000544989 PPP1R10Q96QC0 940 aaKnown RBP12.91□□□□□ -0.34
HDAC4-216ENST00000544989 MAGEF1Q9HAY2 307 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 RXFP1Q9HBX9 757 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 CHST7Q9NS84 486 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 CNTN3Q9P232 1028 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 FNIP2Q9P278 1114 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 USP20Q9Y2K6 914 aa12.91□□□□□ -0.34
HDAC4-216ENST00000544989 USP15Q9Y4E8 981 aaPredicted RBP12.91□□□□□ -0.34
HDAC4-216ENST00000544989 CFAP54Q96N23 3096 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 SMIM28A0A1B0GU29 152 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 CASTOR2A6NHX0 329 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 C19orf67A6NJJ6 358 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 SPDYE4A6NLX3 237 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 ABLIM1O14639 778 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 XPOTO43592 962 aaKnown RBP12.9□□□□□ -0.34
HDAC4-216ENST00000544989 CLTAP09496 248 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 ALADP13716 330 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 RPL9P32969 192 aaKnown RBP12.9□□□□□ -0.34
HDAC4-216ENST00000544989 MTHFRP42898 656 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 POU5F1Q01860 360 aaKnown RBP12.9□□□□□ -0.34
HDAC4-216ENST00000544989 NAB2Q15742 525 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 TMEM31Q5JXX7 168 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 KIAA0319Q5VV43 1072 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 CYP26C1Q6V0L0 522 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 MAP4K3Q8IVH8 894 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 CD302Q8IX05 232 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 LRRC15Q8TF66 581 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 HDAC7Q8WUI4 952 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 AUTS2Q8WXX7 1259 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 SNX27Q96L92 541 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 KLHL5Q96PQ7 755 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 TTPALQ9BTX7 342 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 PHF7Q9BWX1 381 aaPredicted RBP12.9□□□□□ -0.34
HDAC4-216ENST00000544989 S1PR5Q9H228 398 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 TNMDQ9H2S6 317 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 ADAM7Q9H2U9 754 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 SFXN1Q9H9B4 322 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 FAM13BQ9NYF5 915 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 TFIP11Q9UBB9 837 aaKnown RBP12.9□□□□□ -0.34
HDAC4-216ENST00000544989 EXOC7Q9UPT5 735 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 PCDHB13Q9Y5F0 798 aa12.9□□□□□ -0.34
HDAC4-216ENST00000544989 ZNF318Q5VUA4 2279 aa12.9□□□□□ -0.35
HDAC4-216ENST00000544989 OGTO15294 1046 aa12.89□□□□□ -0.35
HDAC4-216ENST00000544989 GLUD1P00367 558 aa12.89□□□□□ -0.35
HDAC4-216ENST00000544989 CNPP09543 421 aaKnown RBP12.89□□□□□ -0.35
HDAC4-216ENST00000544989 ME1P48163 572 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms