RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 CITO14578 2027 aa19.73■□□□□ 0.75
CLSTN3-214ENST00000542663 CD72P21854 359 aa19.73■□□□□ 0.75
CLSTN3-214ENST00000542663 PRKCQQ04759 706 aa19.73■□□□□ 0.75
CLSTN3-214ENST00000542663 NR5A1Q13285 461 aa19.73■□□□□ 0.75
CLSTN3-214ENST00000542663 RSPO4Q2I0M5 234 aaPredicted RBP19.73■□□□□ 0.75
CLSTN3-214ENST00000542663 PPP4R3CPQ6ZMV5 832 aa19.73■□□□□ 0.75
CLSTN3-214ENST00000542663 PIGOQ8TEQ8 1089 aa19.73■□□□□ 0.75
CLSTN3-214ENST00000542663 TNFRSF25Q93038 417 aa19.73■□□□□ 0.75
CLSTN3-214ENST00000542663 BCO2Q9BYV7 579 aa19.73■□□□□ 0.75
CLSTN3-214ENST00000542663 OSBPL6Q9BZF3 934 aa19.73■□□□□ 0.75
CLSTN3-214ENST00000542663 GPRC5CQ9NQ84 441 aa19.73■□□□□ 0.75
CLSTN3-214ENST00000542663 SPATA6Q9NWH7 488 aaPredicted RBP19.73■□□□□ 0.75
CLSTN3-214ENST00000542663 PCDHA12Q9UN75 941 aa19.73■□□□□ 0.75
CLSTN3-214ENST00000542663 POLIQ9UNA4 740 aa19.73■□□□□ 0.75
CLSTN3-214ENST00000542663 LRRIQ4A6NIV6 560 aa19.72■□□□□ 0.75
CLSTN3-214ENST00000542663 POU2F2P09086 479 aa19.72■□□□□ 0.75
CLSTN3-214ENST00000542663 IGFBP6P24592 240 aaPredicted RBP19.72■□□□□ 0.75
CLSTN3-214ENST00000542663 UBXN2BQ14CS0 331 aa19.72■□□□□ 0.75
CLSTN3-214ENST00000542663 CDCA2Q69YH5 1023 aaPredicted RBP19.72■□□□□ 0.75
CLSTN3-214ENST00000542663 NPAS3Q8IXF0 933 aa19.72■□□□□ 0.75
CLSTN3-214ENST00000542663 SLC7A14Q8TBB6 771 aa19.72■□□□□ 0.75
CLSTN3-214ENST00000542663 PRIMPOLQ96LW4 560 aa19.72■□□□□ 0.75
CLSTN3-214ENST00000542663 FZD8Q9H461 694 aa19.72■□□□□ 0.75
CLSTN3-214ENST00000542663 PDZD7Q9H5P4 517 aa19.72■□□□□ 0.75
CLSTN3-214ENST00000542663 LTB4R2Q9NPC1 389 aa19.72■□□□□ 0.75
CLSTN3-214ENST00000542663 SNTG2Q9NY99 539 aa19.72■□□□□ 0.75
CLSTN3-214ENST00000542663 DNMT3BQ9UBC3 853 aaKnown RBP19.72■□□□□ 0.75
CLSTN3-214ENST00000542663 KMT2BQ9UMN6 2715 aaPredicted RBP19.72■□□□□ 0.75
CLSTN3-214ENST00000542663 RALGAPA1Q6GYQ0 2036 aa19.71■□□□□ 0.75
CLSTN3-214ENST00000542663 FAM170BA6NMN3 283 aa19.71■□□□□ 0.75
CLSTN3-214ENST00000542663 WNT7AO00755 349 aa19.71■□□□□ 0.75
CLSTN3-214ENST00000542663 SPTLC1O15269 473 aa19.71■□□□□ 0.75
CLSTN3-214ENST00000542663 EPB41L2O43491 1005 aaKnown RBP19.71■□□□□ 0.75
CLSTN3-214ENST00000542663 LAMTOR5O43504 91 aa19.71■□□□□ 0.75
CLSTN3-214ENST00000542663 USO1O60763 962 aaKnown RBP19.71■□□□□ 0.75
CLSTN3-214ENST00000542663 XYLBO75191 536 aa19.71■□□□□ 0.75
CLSTN3-214ENST00000542663 CDKL5O76039 1030 aa19.71■□□□□ 0.75
CLSTN3-214ENST00000542663 CTDNEP1O95476 244 aa19.71■□□□□ 0.75
CLSTN3-214ENST00000542663 EDN1P05305 212 aa19.71■□□□□ 0.75
CLSTN3-214ENST00000542663 XBP1P17861 261 aa19.71■□□□□ 0.75
CLSTN3-214ENST00000542663 RAB33AQ14088 237 aa19.71■□□□□ 0.75
CLSTN3-214ENST00000542663 FAM187BQ17R55 369 aa19.71■□□□□ 0.75
CLSTN3-214ENST00000542663 VARS2Q5ST30 1063 aaKnown RBP19.71■□□□□ 0.75
CLSTN3-214ENST00000542663 AXDND1Q5T1B0 1012 aaPredicted RBP19.71■□□□□ 0.75
CLSTN3-214ENST00000542663 POTEHQ6S545 545 aa19.71■□□□□ 0.75
CLSTN3-214ENST00000542663 TTC12Q9H892 705 aaPredicted RBP19.71■□□□□ 0.75
CLSTN3-214ENST00000542663 PDRG1Q9NUG6 133 aa19.71■□□□□ 0.75
CLSTN3-214ENST00000542663 PRMT7Q9NVM4 692 aaPredicted RBP19.71■□□□□ 0.75
CLSTN3-214ENST00000542663 RECQL4O94761 1208 aa19.7■□□□□ 0.74
CLSTN3-214ENST00000542663 THP07101 528 aa19.7■□□□□ 0.74
CLSTN3-214ENST00000542663 OR1D2P34982 312 aa19.7■□□□□ 0.74
CLSTN3-214ENST00000542663 CSTF1Q05048 431 aaKnown RBP19.7■□□□□ 0.74
CLSTN3-214ENST00000542663 RSPO2Q6UXX9 243 aaPredicted RBP19.7■□□□□ 0.74
CLSTN3-214ENST00000542663 MAEAQ7L5Y9 396 aa19.7■□□□□ 0.74
CLSTN3-214ENST00000542663 ZBTB44Q8NCP5 570 aa19.7■□□□□ 0.74
CLSTN3-214ENST00000542663 ING5Q8WYH8 240 aa19.7■□□□□ 0.74
CLSTN3-214ENST00000542663 NELL1Q92832 810 aa19.7■□□□□ 0.74
CLSTN3-214ENST00000542663 CLDN23Q96B33 292 aa19.7■□□□□ 0.74
CLSTN3-214ENST00000542663 CCDC43Q96MW1 224 aaKnown RBP19.7■□□□□ 0.74
CLSTN3-214ENST00000542663 USP20Q9Y2K6 914 aa19.7■□□□□ 0.74
CLSTN3-214ENST00000542663 PCDHGA2Q9Y5H1 932 aa19.7■□□□□ 0.74
CLSTN3-214ENST00000542663 SHISA7A6NL88 538 aa19.69■□□□□ 0.74
CLSTN3-214ENST00000542663 LILRB5O75023 590 aa19.69■□□□□ 0.74
CLSTN3-214ENST00000542663 SPATA31C1P0DKV0 1188 aa19.69■□□□□ 0.74
CLSTN3-214ENST00000542663 FGFR3P22607 806 aa19.69■□□□□ 0.74
CLSTN3-214ENST00000542663 TARSP26639 723 aaKnown RBP19.69■□□□□ 0.74
CLSTN3-214ENST00000542663 PFKPQ01813 784 aa19.69■□□□□ 0.74
CLSTN3-214ENST00000542663 ELAVL2Q12926 359 aaKnown RBP19.69■□□□□ 0.74
CLSTN3-214ENST00000542663 FZD5Q13467 585 aa19.69■□□□□ 0.74
CLSTN3-214ENST00000542663 CALCRLQ16602 461 aa19.69■□□□□ 0.74
CLSTN3-214ENST00000542663 UVSSAQ2YD98 709 aa19.69■□□□□ 0.74
CLSTN3-214ENST00000542663 PABPC1LQ4VXU2 614 aaKnown RBP19.69■□□□□ 0.74
CLSTN3-214ENST00000542663 PDXDC1Q6P996 788 aa19.69■□□□□ 0.74
CLSTN3-214ENST00000542663 NOSTRINQ8IVI9 506 aa19.69■□□□□ 0.74
CLSTN3-214ENST00000542663 BSNDQ8WZ55 320 aa19.69■□□□□ 0.74
CLSTN3-214ENST00000542663 BORCS6Q96GS4 357 aa19.69■□□□□ 0.74
CLSTN3-214ENST00000542663 PLA2G2FQ9BZM2 168 aa19.69■□□□□ 0.74
CLSTN3-214ENST00000542663 NCDNQ9UBB6 729 aa19.69■□□□□ 0.74
CLSTN3-214ENST00000542663 KCNH3Q9ULD8 1083 aa19.69■□□□□ 0.74
CLSTN3-214ENST00000542663 TPCN1Q9ULQ1 816 aa19.69■□□□□ 0.74
CLSTN3-214ENST00000542663 CACNA1BQ00975 2339 aa19.69■□□□□ 0.74
CLSTN3-214ENST00000542663 N4BP3O15049 544 aa19.68■□□□□ 0.74
CLSTN3-214ENST00000542663 PFKFB2O60825 505 aa19.68■□□□□ 0.74
CLSTN3-214ENST00000542663 XRCC6P12956 609 aaKnown RBP eCLIP19.68■□□□□ 0.74
CLSTN3-214ENST00000542663 FDPSP14324 419 aaKnown RBP19.68■□□□□ 0.74
CLSTN3-214ENST00000542663 KRT2P35908 639 aa19.68■□□□□ 0.74
CLSTN3-214ENST00000542663 TXKP42681 527 aa19.68■□□□□ 0.74
CLSTN3-214ENST00000542663 MAGEA9P43362 315 aa19.68■□□□□ 0.74
CLSTN3-214ENST00000542663 SLC5A9Q2M3M2 681 aa19.68■□□□□ 0.74
CLSTN3-214ENST00000542663 ZBTB41Q5SVQ8 909 aa19.68■□□□□ 0.74
CLSTN3-214ENST00000542663 CD300LGQ6UXG3 332 aa19.68■□□□□ 0.74
CLSTN3-214ENST00000542663 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.68■□□□□ 0.74
CLSTN3-214ENST00000542663 MTMR9Q96QG7 549 aa19.68■□□□□ 0.74
CLSTN3-214ENST00000542663 CCDC113Q9H0I3 377 aa19.68■□□□□ 0.74
CLSTN3-214ENST00000542663 MTRRQ9UBK8 725 aa19.68■□□□□ 0.74
CLSTN3-214ENST00000542663 EEF1DP3Q658K8 133 aa19.67■□□□□ 0.74
CLSTN3-214ENST00000542663 TSSK4Q6SA08 328 aa19.67■□□□□ 0.74
CLSTN3-214ENST00000542663 TPRG1Q6ZUI0 275 aa19.67■□□□□ 0.74
CLSTN3-214ENST00000542663 ATRIPQ8WXE1 791 aa19.67■□□□□ 0.74
CLSTN3-214ENST00000542663 CNTNAP3BQ96NU0 1288 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms