RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 SCNM1Q9BWG6 230 aa9.18□□□□□ -0.94
CHD4-208ENST00000540960 XPO4Q9C0E2 1151 aaKnown RBP9.18□□□□□ -0.94
CHD4-208ENST00000540960 ENTPD7Q9NQZ7 604 aa9.18□□□□□ -0.94
CHD4-208ENST00000540960 IGSF9Q9P2J2 1179 aa9.18□□□□□ -0.94
CHD4-208ENST00000540960 SEL1LQ9UBV2 794 aa9.18□□□□□ -0.94
CHD4-208ENST00000540960 PCDHB12Q9Y5F1 795 aa9.18□□□□□ -0.94
CHD4-208ENST00000540960 GREB1Q4ZG55 1949 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 FRMPD4Q14CM0 1322 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.17□□□□□ -0.94
CHD4-208ENST00000540960 GOLGA6L9A6NEM1 432 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 IPO5O00410 1097 aaKnown RBP9.17□□□□□ -0.94
CHD4-208ENST00000540960 ADAMTS3O15072 1205 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 MSH4O15457 936 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 LRP3O75074 770 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 TBCAO75347 108 aaKnown RBP9.17□□□□□ -0.94
CHD4-208ENST00000540960 PLA2G4BP0C869 781 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 SMIM10L2AP0DMW4 78 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 SMIM10L2BP0DMW5 78 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 SRFP11831 508 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 EPCAMP16422 314 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 IBSPP21815 317 aaPredicted RBP9.17□□□□□ -0.94
CHD4-208ENST00000540960 HOXA13P31271 388 aaPredicted RBP9.17□□□□□ -0.94
CHD4-208ENST00000540960 KRT76Q01546 638 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 PPP2R3AQ06190 1150 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 ALCAMQ13740 583 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 SF3A2Q15428 464 aaKnown RBP9.17□□□□□ -0.94
CHD4-208ENST00000540960 SPOUT1Q5T280 376 aaKnown RBP9.17□□□□□ -0.94
CHD4-208ENST00000540960 ARHGEF16Q5VV41 709 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 CDKAL1Q5VV42 579 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 NCAPH2Q6IBW4 605 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 KLHL10Q6JEL2 608 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 OTOP3Q7RTS5 596 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 GRAMD1CQ8IYS0 662 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 SYT2Q8N9I0 419 aaPredicted RBP9.17□□□□□ -0.94
CHD4-208ENST00000540960 COLGALT1Q8NBJ5 622 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 SPC24Q8NBT2 197 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 DNERQ8NFT8 737 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 GOLGA5Q8TBA6 731 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 ERCC4Q92889 916 aaPredicted RBP9.17□□□□□ -0.94
CHD4-208ENST00000540960 GPRASP2Q96D09 838 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 C16orf70Q9BSU1 422 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 MMTAG2Q9BU76 263 aaKnown RBP9.17□□□□□ -0.94
CHD4-208ENST00000540960 NUP58Q9BVL2 599 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 NAA15Q9BXJ9 866 aaKnown RBP9.17□□□□□ -0.94
CHD4-208ENST00000540960 BLZF1Q9H2G9 400 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 AGO3Q9H9G7 860 aaKnown RBP9.17□□□□□ -0.94
CHD4-208ENST00000540960 JADE2Q9NQC1 790 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 LIMA1Q9UHB6 759 aaKnown RBP9.17□□□□□ -0.94
CHD4-208ENST00000540960 KIAA1024Q9UPX6 916 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 COL4A3BPQ9Y5P4 624 aa9.17□□□□□ -0.94
CHD4-208ENST00000540960 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.17□□□□□ -0.94
CHD4-208ENST00000540960 PIEZO2Q9H5I5 2752 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 ITIH6Q6UXX5 1313 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 IGLV3-22A0A075B6J6 115 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 A0A1B0GTH6 734 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 PP2D1A8MPX8 630 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 FAM86B1E9PN63 330 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 OPLAHO14841 1288 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 N4BP3O15049 544 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 PSMD10O75832 226 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 FAM86B2P0C5J1 330 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 BMP6P22004 513 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 RPL13P26373 211 aaKnown RBP9.16□□□□□ -0.94
CHD4-208ENST00000540960 CDC25AP30304 524 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 STARD6P59095 220 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 PTPN14Q15678 1187 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 FKBP15Q5T1M5 1219 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 KCNV1Q6PIU1 500 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 NPAS4Q8IUM7 802 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 CNGA4Q8IV77 575 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 VSTM4Q8IW00 320 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 CSGALNACT2Q8N6G5 542 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 GLIS3Q8NEA6 775 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 SYTL5Q8TDW5 730 aaPredicted RBP9.16□□□□□ -0.94
CHD4-208ENST00000540960 CLEC4DQ8WXI8 215 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 DDX12PQ92771 950 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 LENG9Q96B70 501 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 PNMA5Q96PV4 448 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 RMDN3Q96TC7 470 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 LSM14BQ9BX40 385 aaKnown RBP9.16□□□□□ -0.94
CHD4-208ENST00000540960 ZSWIM4Q9H7M6 989 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 BLOC1S4Q9NUP1 217 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 TYW1Q9NV66 732 aaKnown RBP9.16□□□□□ -0.94
CHD4-208ENST00000540960 SETD4Q9NVD3 440 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 PANK4Q9NVE7 773 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 DDX41Q9UJV9 622 aaKnown RBP9.16□□□□□ -0.94
CHD4-208ENST00000540960 CTNND2Q9UQB3 1225 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 UBIAD1Q9Y5Z9 338 aa9.16□□□□□ -0.94
CHD4-208ENST00000540960 FREM2Q5SZK8 3169 aa9.15□□□□□ -0.94
CHD4-208ENST00000540960 UBE4BO95155 1302 aa9.15□□□□□ -0.94
CHD4-208ENST00000540960 A0A1W2PQC6 194 aa9.15□□□□□ -0.94
CHD4-208ENST00000540960 C2orf71A6NGG8 1288 aa9.15□□□□□ -0.94
CHD4-208ENST00000540960 EIF4E1BA6NMX2 242 aaKnown RBP9.15□□□□□ -0.94
CHD4-208ENST00000540960 KCNJ18B7U540 433 aa9.15□□□□□ -0.94
CHD4-208ENST00000540960 ZSCAN12O43309 604 aa9.15□□□□□ -0.94
CHD4-208ENST00000540960 KLRC4O43908 158 aa9.15□□□□□ -0.94
CHD4-208ENST00000540960 CAND2O75155 1236 aa9.15□□□□□ -0.94
CHD4-208ENST00000540960 C1QL1O75973 258 aa9.15□□□□□ -0.94
CHD4-208ENST00000540960 LYPLA2O95372 231 aa9.15□□□□□ -0.94
CHD4-208ENST00000540960 SSBP05455 408 aaKnown RBP eCLIP9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms