RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 PSMD5Q16401 504 aa15.57■□□□□ 0.08
SNHG1-213ENST00000540725 DCAF4L1Q3SXM0 396 aa15.57■□□□□ 0.08
SNHG1-213ENST00000540725 CEP57Q86XR8 500 aa15.57■□□□□ 0.08
SNHG1-213ENST00000540725 SIX5Q8N196 739 aa15.57■□□□□ 0.08
SNHG1-213ENST00000540725 C4orf32Q8N8J7 132 aa15.57■□□□□ 0.08
SNHG1-213ENST00000540725 PIK3R5Q8WYR1 880 aa15.57■□□□□ 0.08
SNHG1-213ENST00000540725 KIFAP3Q92845 792 aa15.57■□□□□ 0.08
SNHG1-213ENST00000540725 ZSCAN31Q96LW9 406 aaPredicted RBP15.57■□□□□ 0.08
SNHG1-213ENST00000540725 SH2B1Q9NRF2 756 aaPredicted RBP15.57■□□□□ 0.08
SNHG1-213ENST00000540725 LRWD1Q9UFC0 647 aa15.57■□□□□ 0.08
SNHG1-213ENST00000540725 FBXW11Q9UKB1 542 aa15.57■□□□□ 0.08
SNHG1-213ENST00000540725 GDAQ9Y2T3 454 aa15.57■□□□□ 0.08
SNHG1-213ENST00000540725 NOTCH4Q99466 2003 aa15.57■□□□□ 0.08
SNHG1-213ENST00000540725 ELAVL2Q12926 359 aaKnown RBP15.56■□□□□ 0.08
SNHG1-213ENST00000540725 GET4Q7L5D6 327 aaPredicted RBP15.56■□□□□ 0.08
SNHG1-213ENST00000540725 LNX1Q8TBB1 728 aaPredicted RBP15.56■□□□□ 0.08
SNHG1-213ENST00000540725 NXPE3Q969Y0 559 aa15.56■□□□□ 0.08
SNHG1-213ENST00000540725 CLSTN3Q9BQT9 956 aa15.56■□□□□ 0.08
SNHG1-213ENST00000540725 DDX19AQ9NUU7 478 aaKnown RBP15.56■□□□□ 0.08
SNHG1-213ENST00000540725 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.56■□□□□ 0.08
SNHG1-213ENST00000540725 KIAA1024Q9UPX6 916 aa15.56■□□□□ 0.08
SNHG1-213ENST00000540725 PROB1E7EW31 1015 aa15.55■□□□□ 0.08
SNHG1-213ENST00000540725 PI15O43692 258 aa15.55■□□□□ 0.08
SNHG1-213ENST00000540725 CFHP08603 1231 aa15.55■□□□□ 0.08
SNHG1-213ENST00000540725 LAMP2P13473 410 aa15.55■□□□□ 0.08
SNHG1-213ENST00000540725 PDIA5Q14554 519 aa15.55■□□□□ 0.08
SNHG1-213ENST00000540725 NT5DC1Q5TFE4 455 aa15.55■□□□□ 0.08
SNHG1-213ENST00000540725 LIN9Q5TKA1 542 aa15.55■□□□□ 0.08
SNHG1-213ENST00000540725 ATF7IP2Q5U623 682 aa15.55■□□□□ 0.08
SNHG1-213ENST00000540725 PDXDC1Q6P996 788 aa15.55■□□□□ 0.08
SNHG1-213ENST00000540725 SLC44A3Q8N4M1 653 aa15.55■□□□□ 0.08
SNHG1-213ENST00000540725 SNX29Q8TEQ0 813 aa15.55■□□□□ 0.08
SNHG1-213ENST00000540725 RTP3Q9BQQ7 232 aa15.55■□□□□ 0.08
SNHG1-213ENST00000540725 WNT16Q9UBV4 365 aa15.55■□□□□ 0.08
SNHG1-213ENST00000540725 DAXXQ9UER7 740 aaPredicted RBP15.55■□□□□ 0.08
SNHG1-213ENST00000540725 PDCD11Q14690 1871 aaKnown RBP15.55■□□□□ 0.08
SNHG1-213ENST00000540725 CACNA1IQ9P0X4 2223 aa15.55■□□□□ 0.08
SNHG1-213ENST00000540725 ZNF292O60281 2723 aa15.55■□□□□ 0.08
SNHG1-213ENST00000540725 MIA3Q5JRA6 1907 aa15.54■□□□□ 0.08
SNHG1-213ENST00000540725 SRFP11831 508 aa15.54■□□□□ 0.08
SNHG1-213ENST00000540725 U2AF2P26368 475 aaKnown RBP eCLIP15.54■□□□□ 0.082e-8■■■■□ 20
SNHG1-213ENST00000540725 NBL1P41271 181 aa15.54■□□□□ 0.08
SNHG1-213ENST00000540725 PTGDRQ13258 359 aa15.54■□□□□ 0.08
SNHG1-213ENST00000540725 GLRA4Q5JXX5 417 aa15.54■□□□□ 0.08
SNHG1-213ENST00000540725 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.54■□□□□ 0.08
SNHG1-213ENST00000540725 APBB1IPQ7Z5R6 666 aaPredicted RBP15.54■□□□□ 0.08
SNHG1-213ENST00000540725 CCDC105Q8IYK2 499 aa15.54■□□□□ 0.08
SNHG1-213ENST00000540725 IGSF22Q8N9C0 903 aa15.54■□□□□ 0.08
SNHG1-213ENST00000540725 PPP1R10Q96QC0 940 aaKnown RBP15.54■□□□□ 0.08
SNHG1-213ENST00000540725 KIF2CQ99661 725 aa15.54■□□□□ 0.08
SNHG1-213ENST00000540725 RAB34Q9BZG1 259 aa15.54■□□□□ 0.08
SNHG1-213ENST00000540725 PCDHB6Q9Y5E3 794 aa15.54■□□□□ 0.08
SNHG1-213ENST00000540725 STK24Q9Y6E0 443 aa15.54■□□□□ 0.08
SNHG1-213ENST00000540725 PHLPP2Q6ZVD8 1323 aa15.53■□□□□ 0.08
SNHG1-213ENST00000540725 KRBA1A5PL33 1030 aa15.53■□□□□ 0.08
SNHG1-213ENST00000540725 TMEM189-UBE2V1I3L0A0 370 aa15.53■□□□□ 0.08
SNHG1-213ENST00000540725 K7ERI5 159 aa15.53■□□□□ 0.08
SNHG1-213ENST00000540725 ADAM12O43184 909 aa15.53■□□□□ 0.08
SNHG1-213ENST00000540725 C8AP07357 584 aa15.53■□□□□ 0.08
SNHG1-213ENST00000540725 HNRNPA1P09651 372 aaKnown RBP eCLIP15.53■□□□□ 0.08
SNHG1-213ENST00000540725 FSHRP23945 695 aa15.53■□□□□ 0.08
SNHG1-213ENST00000540725 TOB1P50616 345 aaPredicted RBP15.53■□□□□ 0.08
SNHG1-213ENST00000540725 HTR4Q13639 388 aa15.53■□□□□ 0.08
SNHG1-213ENST00000540725 PPM1LQ5SGD2 360 aa15.53■□□□□ 0.08
SNHG1-213ENST00000540725 GRASPQ7Z6J2 395 aaPredicted RBP15.53■□□□□ 0.08
SNHG1-213ENST00000540725 CA14Q9ULX7 337 aa15.53■□□□□ 0.08
SNHG1-213ENST00000540725 TNFSF13BQ9Y275 285 aa15.53■□□□□ 0.08
SNHG1-213ENST00000540725 CCDC169A6NNP5 214 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 PP2D1A8MPX8 630 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 ANHXE9PGG2 379 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 E9PMD0 336 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 STK25O00506 426 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 B3GAT3O94766 335 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 FGFR3P22607 806 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 RFX1P22670 979 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 IGFBP6P24592 240 aaPredicted RBP15.52■□□□□ 0.08
SNHG1-213ENST00000540725 HOXA9P31269 272 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 CLCNKBP51801 687 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 PEX3P56589 373 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 NTHL1P78549 312 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 KRT79Q5XKE5 535 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 DCLRE1AQ6PJP8 1040 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 ASCL5Q7RTU5 278 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 DAW1Q8N136 415 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 CEP120Q8N960 986 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 DTWD2Q8NBA8 298 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 UROC1Q96N76 676 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 CDT1Q9H211 546 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 GOLGA2P5Q9HBQ8 144 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 DNM3Q9UQ16 869 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 ZFP37Q9Y6Q3 630 aaPredicted RBP15.52■□□□□ 0.08
SNHG1-213ENST00000540725 NUMBLQ9Y6R0 609 aa15.52■□□□□ 0.08
SNHG1-213ENST00000540725 PRR23AA6NEV1 266 aa15.51■□□□□ 0.07
SNHG1-213ENST00000540725 LAD1O00515 517 aa15.51■□□□□ 0.07
SNHG1-213ENST00000540725 CCL16O15467 120 aa15.51■□□□□ 0.07
SNHG1-213ENST00000540725 HIP1RO75146 1068 aa15.51■□□□□ 0.07
SNHG1-213ENST00000540725 XYLBO75191 536 aa15.51■□□□□ 0.07
SNHG1-213ENST00000540725 OR1D2P34982 312 aa15.51■□□□□ 0.07
SNHG1-213ENST00000540725 GRM5P41594 1212 aa15.51■□□□□ 0.07
SNHG1-213ENST00000540725 NPTX2P47972 431 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms