RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 GCOM2Q9BZD3 368 aaPredicted RBP13.83□□□□□ -0.2
CLSTN3-208ENST00000538933 RAB34Q9BZG1 259 aa13.83□□□□□ -0.2
CLSTN3-208ENST00000538933 PIDD1Q9HB75 910 aa13.83□□□□□ -0.2
CLSTN3-208ENST00000538933 TBC1D22BQ9NU19 505 aa13.83□□□□□ -0.2
CLSTN3-208ENST00000538933 GMEB2Q9UKD1 530 aa13.83□□□□□ -0.2
CLSTN3-208ENST00000538933 ANGPTL2Q9UKU9 493 aa13.83□□□□□ -0.2
CLSTN3-208ENST00000538933 CDH7Q9ULB5 785 aa13.83□□□□□ -0.2
CLSTN3-208ENST00000538933 SSX2IPQ9Y2D8 614 aa13.83□□□□□ -0.2
CLSTN3-208ENST00000538933 PCDHB2Q9Y5E7 798 aa13.83□□□□□ -0.2
CLSTN3-208ENST00000538933 TDRD15B5MCY1 1934 aaKnown RBP13.83□□□□□ -0.2
CLSTN3-208ENST00000538933 CYP3A7-CYP3A51PA0A087WV96 503 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 A0A087WZ62 844 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 IGKV6-21A0A0C4DH24 114 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 DDX11L8A8MPP1 907 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 SLC37A4O43826 429 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 PPP6R2O75170 966 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 OATP04181 439 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 FSHRP23945 695 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 CYP3A7P24462 503 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 TARSP26639 723 aaKnown RBP13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 TXKP42681 527 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 GLUD2P49448 558 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 RAB27AP51159 221 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 ATP2C1P98194 919 aaPredicted RBP13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 MTAPQ13126 283 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 UGCGQ16739 394 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 LAIR1Q6GTX8 287 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 DTHD1Q6ZMT9 781 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 MAMSTRQ6ZN01 415 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 COLGALT2Q8IYK4 626 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 SCLT1Q96NL6 688 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 NELL2Q99435 816 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 FDXACB1Q9BRP7 624 aaPredicted RBP13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 ZNF577Q9BSK1 485 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 NRBP2Q9NSY0 501 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 RCOR1Q9UKL0 485 aa13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 PIN4Q9Y237 131 aaKnown RBP13.82□□□□□ -0.2
CLSTN3-208ENST00000538933 VWA3AA6NCI4 1184 aa13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 F8W810 466 aa13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 TM4SF5O14894 197 aa13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 TBX3O15119 743 aa13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 GDF9O60383 454 aa13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 PRPF40AO75400 957 aaKnown RBP13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 ZMYND10O75800 440 aa13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 STBD1O95210 358 aa13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 POMCP01189 267 aa13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 PTMSP20962 102 aa13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 NTHL1P78549 312 aa13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 CDC42EP1Q00587 391 aa13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 PTPAQ15257 358 aa13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 LPAL2Q16609 132 aa13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 UBXN11Q5T124 520 aa13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 N4BP2L1Q5TBK1 243 aaPredicted RBP13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 ARL6IP4Q66PJ3 421 aaKnown RBP13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 CLEC17AQ6ZS10 378 aa13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 CELF5Q8N6W0 485 aaKnown RBP13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 KRI1Q8N9T8 703 aaKnown RBP13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 URGCPQ8TCY9 931 aa13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 FGF13Q92913 245 aa13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 PGBD4Q96DM1 585 aa13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 MBOAT7Q96N66 472 aa13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 TMEM60Q9H2L4 133 aa13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 SEMA4GQ9NTN9 838 aa13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 KANSL3Q9P2N6 904 aa13.81□□□□□ -0.2
CLSTN3-208ENST00000538933 GAS7O60861 476 aa13.8□□□□□ -0.2
CLSTN3-208ENST00000538933 CUTAO60888 179 aa13.8□□□□□ -0.2
CLSTN3-208ENST00000538933 RETP07949 1114 aa13.8□□□□□ -0.2
CLSTN3-208ENST00000538933 SFPQP23246 707 aaKnown RBP eCLIP13.8□□□□□ -0.2
CLSTN3-208ENST00000538933 PRPHP41219 470 aa13.8□□□□□ -0.2
CLSTN3-208ENST00000538933 PRKCEQ02156 737 aa13.8□□□□□ -0.2
CLSTN3-208ENST00000538933 DSC1Q08554 894 aa13.8□□□□□ -0.2
CLSTN3-208ENST00000538933 ACAP1Q15027 740 aa13.8□□□□□ -0.2
CLSTN3-208ENST00000538933 CSRP2Q16527 193 aa13.8□□□□□ -0.2
CLSTN3-208ENST00000538933 LRCH2Q5VUJ6 765 aa13.8□□□□□ -0.2
CLSTN3-208ENST00000538933 GRASPQ7Z6J2 395 aaPredicted RBP13.8□□□□□ -0.2
CLSTN3-208ENST00000538933 GPR65Q8IYL9 337 aa13.8□□□□□ -0.2
CLSTN3-208ENST00000538933 B3GALT6Q96L58 329 aa13.8□□□□□ -0.2
CLSTN3-208ENST00000538933 FAM20AQ96MK3 541 aa13.8□□□□□ -0.2
CLSTN3-208ENST00000538933 TEKT3Q9BXF9 490 aa13.8□□□□□ -0.2
CLSTN3-208ENST00000538933 NIFKQ9BYG3 293 aaKnown RBP13.8□□□□□ -0.2
CLSTN3-208ENST00000538933 TTC12Q9H892 705 aaPredicted RBP13.8□□□□□ -0.2
CLSTN3-208ENST00000538933 RSAD1Q9HA92 442 aa13.8□□□□□ -0.2
CLSTN3-208ENST00000538933 FNIP2Q9P278 1114 aa13.8□□□□□ -0.2
CLSTN3-208ENST00000538933 PCDHA12Q9UN75 941 aa13.8□□□□□ -0.2
CLSTN3-208ENST00000538933 PRG3Q9Y2Y8 225 aaPredicted RBP13.8□□□□□ -0.2
CLSTN3-208ENST00000538933 GREB1Q4ZG55 1949 aa13.8□□□□□ -0.2
CLSTN3-208ENST00000538933 MSH4O15457 936 aa13.79□□□□□ -0.2
CLSTN3-208ENST00000538933 PROS1P07225 676 aa13.79□□□□□ -0.2
CLSTN3-208ENST00000538933 HOXA11P31270 313 aaPredicted RBP13.79□□□□□ -0.2
CLSTN3-208ENST00000538933 MCM4P33991 863 aa13.79□□□□□ -0.2
CLSTN3-208ENST00000538933 TXLNAP40222 546 aa13.79□□□□□ -0.2
CLSTN3-208ENST00000538933 PFKPQ01813 784 aa13.79□□□□□ -0.2
CLSTN3-208ENST00000538933 POTEHQ6S545 545 aa13.79□□□□□ -0.2
CLSTN3-208ENST00000538933 PRR23CQ6ZRP0 262 aa13.79□□□□□ -0.2
CLSTN3-208ENST00000538933 MTSS1LQ765P7 747 aa13.79□□□□□ -0.2
CLSTN3-208ENST00000538933 ZNF410Q86VK4 478 aa13.79□□□□□ -0.2
CLSTN3-208ENST00000538933 KSR1Q8IVT5 923 aa13.79□□□□□ -0.2
CLSTN3-208ENST00000538933 RASSF8Q8NHQ8 419 aa13.79□□□□□ -0.2
CLSTN3-208ENST00000538933 LENG9Q96B70 501 aa13.79□□□□□ -0.2
CLSTN3-208ENST00000538933 FAM193BQ96PV7 902 aaPredicted RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms