RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 AURKCQ9UQB9 309 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.23□□□□□ -0.61
CLIP1-209ENST00000537178 NCAPD2Q15021 1401 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 CCDC78A2IDD5 438 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 SLC16A4O15374 487 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 GH2P01242 217 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 P4HBP07237 508 aaKnown RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 GFAPP14136 432 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 S100A5P33763 92 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 NECTIN1Q15223 517 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 DEPDC1Q5TB30 811 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 GUF1Q8N442 669 aaKnown RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 ZNF555Q8NEP9 628 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 ADGRL3Q9HAR2 1447 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 POTEMA6NI47 508 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 PRR23D1E9PI22 279 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 PRR23D2P0DMB1 279 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 MAP4P27816 1152 aaKnown RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 RUNX1T1Q06455 604 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 COASYQ13057 564 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 ACCSLQ4AC99 568 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 CCDC92Q53HC0 331 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 FAM102AQ5T9C2 384 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 ENAHQ8N8S7 591 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 TTLL11Q8NHH1 800 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 USP6NLQ92738 828 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 RMDN1Q96DB5 314 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 DYRK4Q9NR20 520 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 NPHP4O75161 1426 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 PJA2O43164 708 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 HMOX2P30519 316 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 QARSP47897 775 aaKnown RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 RCAN1P53805 252 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 CDH6P55285 790 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 PTPN12Q05209 780 aaKnown RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 RASGRF1Q13972 1273 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 CNGA3Q16281 694 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 RBBP7Q16576 425 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 UGP2Q16851 508 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 PFKFB3Q16875 520 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 NUDT18Q6ZVK8 323 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.22□□□□□ -0.615e-7■■■■■ 48.1
CLIP1-209ENST00000537178 BPIFA3Q9BQP9 254 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 MTA3Q9BTC8 594 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 INTS2Q9H0H0 1204 aaKnown RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 TMEM161AQ9NX61 479 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 SMG5Q9UPR3 1016 aaKnown RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 C5orf58C9J3I9 102 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 HSPA1AP0DMV8 641 aaKnown RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 HSPA1BP0DMV9 641 aaKnown RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 NFRKBQ6P4R8 1299 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 PRUNE1Q86TP1 453 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 RTKN2Q8IZC4 609 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 B4GALNT2Q8NHY0 566 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 OTULINQ96BN8 352 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 STRBPQ96SI9 672 aaKnown RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 MRPL4Q9BYD3 311 aaKnown RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 OSBPL5Q9H0X9 879 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 ADNPQ9H2P0 1102 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 MAD2L2Q9UI95 211 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 ROBO2Q9HCK4 1378 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 ESYT3A0FGR9 886 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 HIST1H2AGP0C0S8 130 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 HIST1H2ADP20671 130 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 HSPA9P38646 679 aaKnown RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 GRAPQ13588 217 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 VEPH1Q14D04 833 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 CYTH1Q15438 398 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 HIF1AQ16665 826 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 MEI1Q5TIA1 1274 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 TTC30AQ86WT1 665 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 TEX2Q8IWB9 1127 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 RBM46Q8TBY0 533 aaKnown RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 GRAPLQ8TC17 118 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 CEP95Q96GE4 821 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 DCUN1D1Q96GG9 259 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 ZFYVE19Q96K21 471 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 HIST1H2AHQ96KK5 128 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 ZNF560Q96MR9 790 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 FOPNLQ96NB1 174 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 HIST1H2AJQ99878 128 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 H2AFJQ9BTM1 129 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 ASCC2Q9H1I8 757 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 STMN3Q9NZ72 180 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-209ENST00000537178 ARL2BPQ9Y2Y0 163 aa11.22□□□□□ -0.61
CLIP1-209ENST00000537178 TRIM49BA6NDI0 452 aa11.21□□□□□ -0.61
CLIP1-209ENST00000537178 MOCS2O96007 188 aaPredicted RBP11.21□□□□□ -0.61
CLIP1-209ENST00000537178 PRCPP42785 496 aa11.21□□□□□ -0.61
CLIP1-209ENST00000537178 CDK17Q00537 523 aa11.21□□□□□ -0.61
CLIP1-209ENST00000537178 BYSLQ13895 437 aaKnown RBP11.21□□□□□ -0.61
CLIP1-209ENST00000537178 LRRC14Q15048 493 aa11.21□□□□□ -0.61
CLIP1-209ENST00000537178 DNAL1Q4LDG9 190 aa11.21□□□□□ -0.61
CLIP1-209ENST00000537178 C6orf10Q5SRN2 563 aa11.21□□□□□ -0.61
CLIP1-209ENST00000537178 ADCK1Q86TW2 530 aa11.21□□□□□ -0.61
CLIP1-209ENST00000537178 ADGRG1Q9Y653 693 aa11.21□□□□□ -0.61
CLIP1-209ENST00000537178 A8MXQ7 604 aa11.21□□□□□ -0.61
CLIP1-209ENST00000537178 PRPF4O43172 522 aaKnown RBP eCLIP11.21□□□□□ -0.61
CLIP1-209ENST00000537178 PSMA3P25788 255 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms