RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 NTPCRQ9BSD7 190 aaKnown RBP16.95■□□□□ 0.3
CPSF1-211ENST00000533492 TTPALQ9BTX7 342 aa16.95■□□□□ 0.3
CPSF1-211ENST00000533492 TARS2Q9BW92 718 aaKnown RBP16.95■□□□□ 0.3
CPSF1-211ENST00000533492 PLEKHA4Q9H4M7 779 aa16.95■□□□□ 0.3
CPSF1-211ENST00000533492 TOPORSQ9NS56 1045 aaPredicted RBP16.95■□□□□ 0.3
CPSF1-211ENST00000533492 KCND2Q9NZV8 630 aa16.95■□□□□ 0.3
CPSF1-211ENST00000533492 LIMD1Q9UGP4 676 aa16.95■□□□□ 0.3
CPSF1-211ENST00000533492 SORCS3Q9UPU3 1222 aa16.95■□□□□ 0.3
CPSF1-211ENST00000533492 VPS37CA5D8V6 355 aaPredicted RBP16.94■□□□□ 0.3
CPSF1-211ENST00000533492 SLC26A4O43511 780 aa16.94■□□□□ 0.3
CPSF1-211ENST00000533492 C1RP00736 705 aa16.94■□□□□ 0.3
CPSF1-211ENST00000533492 PLS3P13797 630 aa16.94■□□□□ 0.3
CPSF1-211ENST00000533492 RPL17P18621 184 aaKnown RBP16.94■□□□□ 0.3
CPSF1-211ENST00000533492 GRM5P41594 1212 aa16.94■□□□□ 0.3
CPSF1-211ENST00000533492 OSTNP61366 133 aa16.94■□□□□ 0.3
CPSF1-211ENST00000533492 MTMR3Q13615 1198 aa16.94■□□□□ 0.3
CPSF1-211ENST00000533492 CUL4AQ13619 759 aa16.94■□□□□ 0.3
CPSF1-211ENST00000533492 PRSS55Q6UWB4 352 aaPredicted RBP16.94■□□□□ 0.3
CPSF1-211ENST00000533492 CYP26C1Q6V0L0 522 aa16.94■□□□□ 0.3
CPSF1-211ENST00000533492 CMASQ8NFW8 434 aaPredicted RBP16.94■□□□□ 0.3
CPSF1-211ENST00000533492 RASSF8Q8NHQ8 419 aa16.94■□□□□ 0.3
CPSF1-211ENST00000533492 SPIRE2Q8WWL2 714 aa16.94■□□□□ 0.3
CPSF1-211ENST00000533492 CDT1Q9H211 546 aa16.94■□□□□ 0.3
CPSF1-211ENST00000533492 PIDD1Q9HB75 910 aa16.94■□□□□ 0.3
CPSF1-211ENST00000533492 TGM5O43548 720 aa16.93■□□□□ 0.3
CPSF1-211ENST00000533492 B3GAT3O94766 335 aa16.93■□□□□ 0.3
CPSF1-211ENST00000533492 MCF2P10911 925 aa16.93■□□□□ 0.3
CPSF1-211ENST00000533492 HARSP12081 509 aaKnown RBP16.93■□□□□ 0.3
CPSF1-211ENST00000533492 SLC12A3P55017 1021 aa16.93■□□□□ 0.3
CPSF1-211ENST00000533492 DHX8Q14562 1220 aaKnown RBP16.93■□□□□ 0.3
CPSF1-211ENST00000533492 SF3A1Q15459 793 aaKnown RBP16.93■□□□□ 0.3
CPSF1-211ENST00000533492 NAB2Q15742 525 aa16.93■□□□□ 0.3
CPSF1-211ENST00000533492 TMEM119Q4V9L6 283 aa16.93■□□□□ 0.3
CPSF1-211ENST00000533492 RTP2Q5QGT7 225 aa16.93■□□□□ 0.3
CPSF1-211ENST00000533492 PDXDC1Q6P996 788 aa16.93■□□□□ 0.3
CPSF1-211ENST00000533492 DCLRE1AQ6PJP8 1040 aa16.93■□□□□ 0.3
CPSF1-211ENST00000533492 MPZL3Q6UWV2 235 aa16.93■□□□□ 0.3
CPSF1-211ENST00000533492 TAS1R3Q7RTX0 852 aa16.93■□□□□ 0.3
CPSF1-211ENST00000533492 UBALD2Q8IYN6 164 aa16.93■□□□□ 0.3
CPSF1-211ENST00000533492 CEP120Q8N960 986 aa16.93■□□□□ 0.3
CPSF1-211ENST00000533492 FEZF2Q8TBJ5 459 aa16.93■□□□□ 0.3
CPSF1-211ENST00000533492 SMG7Q92540 1137 aaKnown RBP16.93■□□□□ 0.3
CPSF1-211ENST00000533492 UROC1Q96N76 676 aa16.93■□□□□ 0.3
CPSF1-211ENST00000533492 ACAP3Q96P50 834 aa16.93■□□□□ 0.3
CPSF1-211ENST00000533492 PPP1R10Q96QC0 940 aaKnown RBP16.93■□□□□ 0.3
CPSF1-211ENST00000533492 KCNH6Q9H252 994 aa16.93■□□□□ 0.3
CPSF1-211ENST00000533492 PTPRHQ9HD43 1115 aa16.93■□□□□ 0.3
CPSF1-211ENST00000533492 LARSQ9P2J5 1176 aaKnown RBP16.93■□□□□ 0.3
CPSF1-211ENST00000533492 MYH11P35749 1972 aa16.93■□□□□ 0.3
CPSF1-211ENST00000533492 TRIP11Q15643 1979 aa16.92■□□□□ 0.3
CPSF1-211ENST00000533492 SMIM28A0A1B0GU29 152 aa16.92■□□□□ 0.3
CPSF1-211ENST00000533492 H0YCG3 227 aa16.92■□□□□ 0.3
CPSF1-211ENST00000533492 RFPL2O75678 378 aa16.92■□□□□ 0.3
CPSF1-211ENST00000533492 ASGR2P07307 311 aa16.92■□□□□ 0.3
CPSF1-211ENST00000533492 LONP1P36776 959 aaKnown RBP16.92■□□□□ 0.3
CPSF1-211ENST00000533492 CLCNKBP51801 687 aa16.92■□□□□ 0.3
CPSF1-211ENST00000533492 PSMD5Q16401 504 aa16.92■□□□□ 0.3
CPSF1-211ENST00000533492 LILRA6Q6PI73 481 aa16.92■□□□□ 0.3
CPSF1-211ENST00000533492 FBXL6Q8N531 539 aa16.92■□□□□ 0.3
CPSF1-211ENST00000533492 PIK3R5Q8WYR1 880 aa16.92■□□□□ 0.3
CPSF1-211ENST00000533492 STAMQ92783 540 aa16.92■□□□□ 0.3
CPSF1-211ENST00000533492 SLC38A7Q9NVC3 462 aa16.92■□□□□ 0.3
CPSF1-211ENST00000533492 PLXNA3P51805 1871 aa16.92■□□□□ 0.3
CPSF1-211ENST00000533492 NPHP3-ACAD11A0A0J9YXS1 232 aa16.91■□□□□ 0.3
CPSF1-211ENST00000533492 TRAPPC3O43617 180 aa16.91■□□□□ 0.3
CPSF1-211ENST00000533492 TOM1L1O75674 476 aa16.91■□□□□ 0.3
CPSF1-211ENST00000533492 KRT18P05783 430 aaKnown RBP16.91■□□□□ 0.3
CPSF1-211ENST00000533492 PROZP22891 400 aa16.91■□□□□ 0.3
CPSF1-211ENST00000533492 MATR3P43243 847 aaKnown RBP eCLIP16.91■□□□□ 0.3
CPSF1-211ENST00000533492 CACNB1Q02641 598 aaPredicted RBP16.91■□□□□ 0.3
CPSF1-211ENST00000533492 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.91■□□□□ 0.3
CPSF1-211ENST00000533492 GPBP1Q86WP2 473 aa16.91■□□□□ 0.3
CPSF1-211ENST00000533492 TMEM161BQ8NDZ6 487 aa16.91■□□□□ 0.3
CPSF1-211ENST00000533492 LNX1Q8TBB1 728 aaPredicted RBP16.91■□□□□ 0.3
CPSF1-211ENST00000533492 ASIC4Q96FT7 647 aa16.91■□□□□ 0.3
CPSF1-211ENST00000533492 DDX27Q96GQ7 796 aaKnown RBP16.91■□□□□ 0.3
CPSF1-211ENST00000533492 ZBTB45Q96K62 511 aaPredicted RBP16.91■□□□□ 0.3
CPSF1-211ENST00000533492 CLSTN3Q9BQT9 956 aa16.91■□□□□ 0.3
CPSF1-211ENST00000533492 RHOBTB2Q9BYZ6 727 aa16.91■□□□□ 0.3
CPSF1-211ENST00000533492 WDR6Q9NNW5 1121 aaKnown RBP16.91■□□□□ 0.3
CPSF1-211ENST00000533492 ZDHHC7Q9NXF8 308 aa16.91■□□□□ 0.3
CPSF1-211ENST00000533492 ANKFY1Q9P2R3 1169 aa16.91■□□□□ 0.3
CPSF1-211ENST00000533492 MTCL1Q9Y4B5 1905 aaKnown RBP16.91■□□□□ 0.3
CPSF1-211ENST00000533492 C2orf16Q68DN1 1984 aa16.9■□□□□ 0.3
CPSF1-211ENST00000533492 TMEM189-UBE2V1I3L0A0 370 aa16.9■□□□□ 0.3
CPSF1-211ENST00000533492 BRD1O95696 1058 aa16.9■□□□□ 0.3
CPSF1-211ENST00000533492 MAPTP10636 758 aaKnown RBP16.9■□□□□ 0.3
CPSF1-211ENST00000533492 GBP2P32456 591 aaPredicted RBP16.9■□□□□ 0.3
CPSF1-211ENST00000533492 NOLC1Q14978 699 aaKnown RBP eCLIP16.9■□□□□ 0.3
CPSF1-211ENST00000533492 UPP1Q16831 310 aa16.9■□□□□ 0.3
CPSF1-211ENST00000533492 ARSHQ5FYA8 562 aa16.9■□□□□ 0.3
CPSF1-211ENST00000533492 XKR4Q5GH76 650 aa16.9■□□□□ 0.3
CPSF1-211ENST00000533492 LIN9Q5TKA1 542 aa16.9■□□□□ 0.3
CPSF1-211ENST00000533492 ALKAL1Q6UXT8 129 aa16.9■□□□□ 0.3
CPSF1-211ENST00000533492 BICD1Q96G01 975 aa16.9■□□□□ 0.3
CPSF1-211ENST00000533492 BACH2Q9BYV9 841 aa16.9■□□□□ 0.3
CPSF1-211ENST00000533492 PRKD2Q9BZL6 878 aa16.9■□□□□ 0.3
CPSF1-211ENST00000533492 GOLGA2P5Q9HBQ8 144 aa16.9■□□□□ 0.3
CPSF1-211ENST00000533492 ODF2LQ9ULJ1 636 aa16.9■□□□□ 0.3
CPSF1-211ENST00000533492 MUC6Q6W4X9 2439 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms