RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 TPRP12270 2363 aaKnown RBP15.81■□□□□ 0.12
CPSF1-201ENST00000526271 FSHRP23945 695 aa15.81■□□□□ 0.12
CPSF1-201ENST00000526271 TFDP1Q14186 410 aa15.81■□□□□ 0.12
CPSF1-201ENST00000526271 CALCRLQ16602 461 aa15.81■□□□□ 0.12
CPSF1-201ENST00000526271 ECM1Q16610 540 aa15.81■□□□□ 0.12
CPSF1-201ENST00000526271 FAM171A1Q5VUB5 890 aa15.81■□□□□ 0.12
CPSF1-201ENST00000526271 CATSPER3Q86XQ3 398 aa15.81■□□□□ 0.12
CPSF1-201ENST00000526271 NOSTRINQ8IVI9 506 aa15.81■□□□□ 0.12
CPSF1-201ENST00000526271 PJA1Q8NG27 643 aa15.81■□□□□ 0.12
CPSF1-201ENST00000526271 FGF13Q92913 245 aa15.81■□□□□ 0.12
CPSF1-201ENST00000526271 NXPE3Q969Y0 559 aa15.81■□□□□ 0.12
CPSF1-201ENST00000526271 PLA2G2FQ9BZM2 168 aa15.81■□□□□ 0.12
CPSF1-201ENST00000526271 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.81■□□□□ 0.12
CPSF1-201ENST00000526271 C8AP07357 584 aa15.8■□□□□ 0.12
CPSF1-201ENST00000526271 FOXK2Q01167 660 aa15.8■□□□□ 0.12
CPSF1-201ENST00000526271 FZD5Q13467 585 aa15.8■□□□□ 0.12
CPSF1-201ENST00000526271 PSMD5Q16401 504 aa15.8■□□□□ 0.12
CPSF1-201ENST00000526271 SLC5A9Q2M3M2 681 aa15.8■□□□□ 0.12
CPSF1-201ENST00000526271 DCLRE1AQ6PJP8 1040 aa15.8■□□□□ 0.12
CPSF1-201ENST00000526271 ERMP1Q7Z2K6 904 aa15.8■□□□□ 0.12
CPSF1-201ENST00000526271 C1orf210Q8IVY1 113 aa15.8■□□□□ 0.12
CPSF1-201ENST00000526271 TMEM130Q8N3G9 435 aa15.8■□□□□ 0.12
CPSF1-201ENST00000526271 TTPALQ9BTX7 342 aa15.8■□□□□ 0.12
CPSF1-201ENST00000526271 KIFC3Q9BVG8 833 aa15.8■□□□□ 0.12
CPSF1-201ENST00000526271 TRIM6Q9C030 488 aaPredicted RBP15.8■□□□□ 0.12
CPSF1-201ENST00000526271 PIDD1Q9HB75 910 aa15.8■□□□□ 0.12
CPSF1-201ENST00000526271 DNMT3BQ9UBC3 853 aaKnown RBP15.8■□□□□ 0.12
CPSF1-201ENST00000526271 CDH7Q9ULB5 785 aa15.8■□□□□ 0.12
CPSF1-201ENST00000526271 SIT1Q9Y3P8 196 aa15.8■□□□□ 0.12
CPSF1-201ENST00000526271 PDCD11Q14690 1871 aaKnown RBP15.8■□□□□ 0.12
CPSF1-201ENST00000526271 KMT2BQ9UMN6 2715 aaPredicted RBP15.79■□□□□ 0.12
CPSF1-201ENST00000526271 SF3B1O75533 1304 aaKnown RBP eCLIP15.79■□□□□ 0.129e-7■■■■■ 57.4
CPSF1-201ENST00000526271 LRRIQ4A6NIV6 560 aa15.79■□□□□ 0.12
CPSF1-201ENST00000526271 TADA2AO75478 443 aa15.79■□□□□ 0.12
CPSF1-201ENST00000526271 CDKL5O76039 1030 aa15.79■□□□□ 0.12
CPSF1-201ENST00000526271 LMNAP02545 664 aaKnown RBP15.79■□□□□ 0.12
CPSF1-201ENST00000526271 FGFR3P22607 806 aa15.79■□□□□ 0.12
CPSF1-201ENST00000526271 SOX4Q06945 474 aaPredicted RBP15.79■□□□□ 0.12
CPSF1-201ENST00000526271 SNW1Q13573 536 aaKnown RBP15.79■□□□□ 0.12
CPSF1-201ENST00000526271 NT5DC1Q5TFE4 455 aa15.79■□□□□ 0.12
CPSF1-201ENST00000526271 NPAS3Q8IXF0 933 aa15.79■□□□□ 0.12
CPSF1-201ENST00000526271 DIS3L2Q8IYB7 885 aaKnown RBP15.79■□□□□ 0.12
CPSF1-201ENST00000526271 GTF3C6Q969F1 213 aa15.79■□□□□ 0.12
CPSF1-201ENST00000526271 NAP1L4Q99733 375 aaKnown RBP15.79■□□□□ 0.12
CPSF1-201ENST00000526271 GOLGA2P5Q9HBQ8 144 aa15.79■□□□□ 0.12
CPSF1-201ENST00000526271 I3L4J1 428 aa15.78■□□□□ 0.12
CPSF1-201ENST00000526271 STK25O00506 426 aa15.78■□□□□ 0.12
CPSF1-201ENST00000526271 MARCH6O60337 910 aa15.78■□□□□ 0.12
CPSF1-201ENST00000526271 NEMFO60524 1076 aa15.78■□□□□ 0.12
CPSF1-201ENST00000526271 BAG4O95429 457 aaKnown RBP15.78■□□□□ 0.12
CPSF1-201ENST00000526271 XRCC6P12956 609 aaKnown RBP eCLIP15.78■□□□□ 0.12
CPSF1-201ENST00000526271 CD72P21854 359 aa15.78■□□□□ 0.12
CPSF1-201ENST00000526271 RAB33AQ14088 237 aa15.78■□□□□ 0.12
CPSF1-201ENST00000526271 GLRA4Q5JXX5 417 aa15.78■□□□□ 0.12
CPSF1-201ENST00000526271 CEP57Q86XR8 500 aa15.78■□□□□ 0.12
CPSF1-201ENST00000526271 KIAA2013Q8IYS2 634 aa15.78■□□□□ 0.12
CPSF1-201ENST00000526271 ZNF687Q8N1G0 1237 aa15.78■□□□□ 0.12
CPSF1-201ENST00000526271 CEP120Q8N960 986 aa15.78■□□□□ 0.12
CPSF1-201ENST00000526271 SLC7A14Q8TBB6 771 aa15.78■□□□□ 0.12
CPSF1-201ENST00000526271 PRIMPOLQ96LW4 560 aa15.78■□□□□ 0.12
CPSF1-201ENST00000526271 PPP1R10Q96QC0 940 aaKnown RBP15.78■□□□□ 0.12
CPSF1-201ENST00000526271 KXD1Q9BQD3 176 aa15.78■□□□□ 0.12
CPSF1-201ENST00000526271 DPP7Q9UHL4 492 aa15.78■□□□□ 0.12
CPSF1-201ENST00000526271 CITO14578 2027 aa15.77■□□□□ 0.12
CPSF1-201ENST00000526271 NCANO14594 1321 aa15.77■□□□□ 0.12
CPSF1-201ENST00000526271 TKTP29401 623 aaKnown RBP15.77■□□□□ 0.12
CPSF1-201ENST00000526271 HOXA9P31269 272 aa15.77■□□□□ 0.12
CPSF1-201ENST00000526271 CLCNKBP51801 687 aa15.77■□□□□ 0.12
CPSF1-201ENST00000526271 ING5Q8WYH8 240 aa15.77■□□□□ 0.12
CPSF1-201ENST00000526271 DDX27Q96GQ7 796 aaKnown RBP15.77■□□□□ 0.12
CPSF1-201ENST00000526271 PRMT7Q9NVM4 692 aaPredicted RBP15.77■□□□□ 0.12
CPSF1-201ENST00000526271 MTRRQ9UBK8 725 aa15.77■□□□□ 0.12
CPSF1-201ENST00000526271 TICRRQ7Z2Z1 1910 aa15.76■□□□□ 0.11
CPSF1-201ENST00000526271 CACNA1BQ00975 2339 aa15.76■□□□□ 0.11
CPSF1-201ENST00000526271 ACKR2O00590 384 aa15.76■□□□□ 0.11
CPSF1-201ENST00000526271 TBC1D4O60343 1298 aa15.76■□□□□ 0.11
CPSF1-201ENST00000526271 NR1I2O75469 434 aa15.76■□□□□ 0.11
CPSF1-201ENST00000526271 PRKCBP05771 671 aa15.76■□□□□ 0.11
CPSF1-201ENST00000526271 THP07101 528 aa15.76■□□□□ 0.11
CPSF1-201ENST00000526271 POU2F2P09086 479 aa15.76■□□□□ 0.11
CPSF1-201ENST00000526271 HNRNPA1P09651 372 aaKnown RBP eCLIP15.76■□□□□ 0.11
CPSF1-201ENST00000526271 XBP1P17861 261 aa15.76■□□□□ 0.11
CPSF1-201ENST00000526271 CYP11B2P19099 503 aa15.76■□□□□ 0.11
CPSF1-201ENST00000526271 FCARP24071 287 aa15.76■□□□□ 0.11
CPSF1-201ENST00000526271 OR1D2P34982 312 aa15.76■□□□□ 0.11
CPSF1-201ENST00000526271 BRCC3P46736 316 aa15.76■□□□□ 0.11
CPSF1-201ENST00000526271 PPM1LQ5SGD2 360 aa15.76■□□□□ 0.11
CPSF1-201ENST00000526271 AXDND1Q5T1B0 1012 aaPredicted RBP15.76■□□□□ 0.11
CPSF1-201ENST00000526271 PADI6Q6TGC4 694 aa15.76■□□□□ 0.11
CPSF1-201ENST00000526271 TAS1R3Q7RTX0 852 aa15.76■□□□□ 0.11
CPSF1-201ENST00000526271 C4orf32Q8N8J7 132 aa15.76■□□□□ 0.11
CPSF1-201ENST00000526271 NELL1Q92832 810 aa15.76■□□□□ 0.11
CPSF1-201ENST00000526271 ZMAT2Q96NC0 199 aaKnown RBP15.76■□□□□ 0.11
CPSF1-201ENST00000526271 GDAQ9Y2T3 454 aa15.76■□□□□ 0.11
CPSF1-201ENST00000526271 ACACBO00763 2458 aa15.75■□□□□ 0.11
CPSF1-201ENST00000526271 KANSL1LA0AUZ9 987 aa15.75■□□□□ 0.11
CPSF1-201ENST00000526271 TMEM189-UBE2V1I3L0A0 370 aa15.75■□□□□ 0.11
CPSF1-201ENST00000526271 ABLIM1O14639 778 aa15.75■□□□□ 0.11
CPSF1-201ENST00000526271 ATP2B1P20020 1258 aa15.75■□□□□ 0.11
CPSF1-201ENST00000526271 TARSP26639 723 aaKnown RBP15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms