RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 MPPED1O15442 326 aa0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 MSCO60682 206 aa0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 ATP5F1P24539 256 aaPredicted RBP0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 HOXD9P28356 352 aaPredicted RBP0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 GLIPR1P48060 266 aa0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 ERVFC1-1P60608 527 aa0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 SRSF1Q07955 248 aaKnown RBP eCLIP0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 MRPL49Q13405 166 aaKnown RBP0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 LPAL2Q16609 132 aa0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 C15orf39Q6ZRI6 1047 aa0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 PPIL6Q8IXY8 311 aa0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 MUC20Q8N307 709 aaPredicted RBP0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 C8orf58Q8NAV2 365 aa0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 RNF169Q8NCN4 708 aa0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 NEUROG1Q92886 237 aa0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 REPS1Q96D71 796 aa0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 BOD1Q96IK1 185 aa0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 KCNJ15Q99712 375 aa0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 RMI1Q9H9A7 625 aa0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 GALNT9Q9HCQ5 603 aa0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 KLHL11Q9NVR0 708 aa0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 NTNG1Q9Y2I2 539 aa0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 NUB1Q9Y5A7 615 aa0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 NFS1Q9Y697 457 aa0.14□□□□□ -2.39
RNU6-539P-201ENST00000516665 MTSS1O43312 755 aa0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 GREM1O60565 184 aa0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 DNAJB5O75953 348 aa0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 APOHP02749 345 aaPredicted RBP0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 C4BPAP04003 597 aaKnown RBP0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 RBP3P10745 1247 aa0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 GNAT1P11488 350 aa0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 CYP19A1P11511 503 aaPredicted RBP0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 HNRNPLP14866 589 aaKnown RBP eCLIP0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 DRD4P21917 467 aa0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 CASRP41180 1078 aa0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 ECI1P42126 302 aa0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 FMR1Q06787 632 aaKnown RBP eCLIP0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 SF3B3Q15393 1217 aaKnown RBP0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 CYP2A13Q16696 494 aa0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 ANKS6Q68DC2 871 aa0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 KIAA1211LQ6NV74 962 aa0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 RUFY4Q6ZNE9 571 aa0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 THNSL2Q86YJ6 484 aa0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 INPP4AQ96PE3 977 aaPredicted RBP0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 SDF2L1Q9HCN8 221 aa0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 ZIM2Q9NZV7 527 aa0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 SH3BP4Q9P0V3 963 aa0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 USP36Q9P275 1121 aaKnown RBP0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 PCDHB10Q9UN67 800 aa0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 MAGED2Q9UNF1 606 aaPredicted RBP0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 PCDHB6Q9Y5E3 794 aa0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 ROBO2Q9HCK4 1378 aa0.13□□□□□ -2.39
RNU6-539P-201ENST00000516665 GPR98Q8WXG9 6306 aa0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 A0A1B0GUV1 79 aa0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 FCHO1O14526 889 aa0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 SCAMP3O14828 347 aaKnown RBP0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 TBX1O43435 398 aa0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 PAPSS2O95340 614 aaPredicted RBP0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 MMEP08473 750 aa0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 APEX1P27695 318 aaKnown RBP0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 VAV2P52735 878 aa0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 POU5F1BQ06416 359 aa0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 SPIRE1Q08AE8 756 aa0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 GNPTABQ3T906 1256 aa0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 MIS18BP1Q6P0N0 1132 aa0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 VWA1Q6PCB0 445 aa0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 TRIM59Q8IWR1 403 aa0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 ARHGAP39Q9C0H5 1083 aa0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 C14orf93Q9H972 538 aaKnown RBP0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 CD93Q9NPY3 652 aa0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 KCNQ5Q9NR82 932 aa0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 ZBTB40Q9NUA8 1239 aa0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 RNF19AQ9NV58 838 aa0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 FAM120CQ9NX05 1096 aaKnown RBP0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 ING3Q9NXR8 418 aa0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 HEY2Q9UBP5 337 aa0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 CLIP2Q9UDT6 1046 aa0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 ATP11BQ9Y2G3 1177 aa0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 WDR17Q8IZU2 1322 aa0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 ATXN2Q99700 1313 aaKnown RBP0.12□□□□□ -2.39
RNU6-539P-201ENST00000516665 PRAMEF25A6NGN4 478 aa0.11□□□□□ -2.39
RNU6-539P-201ENST00000516665 GCOM1H8Y6P7 765 aaPredicted RBP0.11□□□□□ -2.39
RNU6-539P-201ENST00000516665 SCG5P05408 212 aa0.11□□□□□ -2.39
RNU6-539P-201ENST00000516665 MCM4P33991 863 aa0.11□□□□□ -2.39
RNU6-539P-201ENST00000516665 CHN2P52757 468 aa0.11□□□□□ -2.39
RNU6-539P-201ENST00000516665 WNT3AP56704 352 aa0.11□□□□□ -2.39
RNU6-539P-201ENST00000516665 TXNRD1Q16881 649 aa0.11□□□□□ -2.39
RNU6-539P-201ENST00000516665 NADSYN1Q6IA69 706 aa0.11□□□□□ -2.39
RNU6-539P-201ENST00000516665 PLEKHA7Q6IQ23 1121 aa0.11□□□□□ -2.39
RNU6-539P-201ENST00000516665 Q6ZVH6 145 aa0.11□□□□□ -2.39
RNU6-539P-201ENST00000516665 RHOT2Q8IXI1 618 aa0.11□□□□□ -2.39
RNU6-539P-201ENST00000516665 CAMKK1Q8N5S9 505 aa0.11□□□□□ -2.39
RNU6-539P-201ENST00000516665 MAPK1IP1LQ8NDC0 245 aa0.11□□□□□ -2.39
RNU6-539P-201ENST00000516665 OR5AN1Q8NGI8 311 aa0.11□□□□□ -2.39
RNU6-539P-201ENST00000516665 IL17RAQ96F46 866 aa0.11□□□□□ -2.39
RNU6-539P-201ENST00000516665 FBXL20Q96IG2 436 aa0.11□□□□□ -2.39
RNU6-539P-201ENST00000516665 MRGPRX3Q96LB0 322 aa0.11□□□□□ -2.39
RNU6-539P-201ENST00000516665 NODALQ96S42 347 aa0.11□□□□□ -2.39
RNU6-539P-201ENST00000516665 MOV10L1Q9BXT6 1211 aaKnown RBP0.11□□□□□ -2.39
RNU6-539P-201ENST00000516665 UBP1Q9NZI7 540 aa0.11□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms