RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 PCDHA7Q9UN72 937 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 CYP3A7-CYP3A51PA0A087WV96 503 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 MAFO75444 373 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 B3GAT3O94766 335 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 DLATP10515 647 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 CYP3A7P24462 503 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 NPTX2P47972 431 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 SMTNP53814 917 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 IRX1P78414 480 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 ATP2C1P98194 919 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 GRB10Q13322 594 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 PPP4R3CPQ6ZMV5 832 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 SV2BQ7L1I2 683 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 C4orf19Q8IY42 314 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 DDX12PQ92771 950 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 KIF9Q9HAQ2 790 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 PLAGL2Q9UPG8 496 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 FRMPD4Q14CM0 1322 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 GPR32O75388 356 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 ATG7O95352 703 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 MYBL2P10244 700 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 LIG3P49916 1009 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 CUL4AQ13619 759 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 MYBPC2Q14324 1141 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 RAB30Q15771 203 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 TMC5Q6UXY8 1006 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 MMS22LQ6ZRQ5 1243 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 CEP57L1Q8IYX8 460 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 DYDC1Q8WWB3 177 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 POMGNT1Q8WZA1 660 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 HERVK_113Q902F9 699 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 PNMA5Q96PV4 448 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 TGS1Q96RS0 853 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 MMTAG2Q9BU76 263 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 TRAIPQ9BWF2 469 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 RABL2AQ9UBK7 228 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 BARX2Q9UMQ3 279 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 ADGRA3Q8IWK6 1321 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 A0A087X0B3 334 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 STAG3L1P0CL83 205 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 GHRHRQ02643 423 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 CNNM3Q8NE01 707 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 TOP1MTQ969P6 601 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 IFT122Q9HBG6 1241 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 A0A0G2JMZ2 1700 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 SCN10AQ9Y5Y9 1956 aa8.56□□□□□ -1.04
LIMCH1-219ENST00000514096 GOLGA6L19H0YKK7 550 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 LPXNO60711 386 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 TFAMQ00059 246 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 HS1BP3Q53T59 392 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 ZBTB41Q5SVQ8 909 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 ARMC2Q8NEN0 867 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 FEZF2Q8TBJ5 459 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 LRRC15Q8TF66 581 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 TCP11Q8WWU5 503 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 PGLYRP2Q96PD5 576 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 TCF25Q9BQ70 676 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 TLE6Q9H808 572 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 PCDHB12Q9Y5F1 795 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 TADA2AO75478 443 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 GBP2P32456 591 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 STX17P56962 302 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 TMC6Q7Z403 805 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 VPS52Q8N1B4 723 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 ZSWIM2Q8NEG5 633 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 SPATA17Q96L03 361 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 YIPF2Q9BWQ6 316 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 FGFBP2Q9BYJ0 223 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 RSAD1Q9HA92 442 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 MRGBPQ9NV56 204 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 LARSQ9P2J5 1176 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 IPPQ9Y573 584 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 MBLAC1A4D2B0 266 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 LINC01565O15544 149 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 CLDN3O15551 220 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 GADD45BO75293 160 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 RECQL4O94761 1208 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 TNFSF9P41273 254 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 RWDD2BP57060 319 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 CCDC15Q0P6D6 951 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 ATF7IP2Q5U623 682 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 HAUS6Q7Z4H7 955 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 SRLQ86TD4 932 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 MCPH1Q8NEM0 835 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 JAKMIP2Q96AA8 810 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 SLC9A7Q96T83 725 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 MIOSQ9NXC5 875 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 DACT1Q9NYF0 836 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 TRANK1O15050 2925 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 ALPK3Q96L96 1907 aa8.55□□□□□ -1.04
LIMCH1-219ENST00000514096 TBX3O15119 743 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 EDN1P05305 212 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 CXCL8P10145 99 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 CYP11B2P19099 503 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 BRCC3P46736 316 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 ADAM17P78536 824 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 LRIT3Q3SXY7 679 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 TCEAL5Q5H9L2 206 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms