RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 PTPROQ16827 1216 aa9.88□□□□□ -0.83
PDGFRA-208ENST00000509490 RNF43Q68DV7 783 aa9.88□□□□□ -0.83
PDGFRA-208ENST00000509490 XRRA1Q6P2D8 792 aa9.88□□□□□ -0.83
PDGFRA-208ENST00000509490 DRICH1Q6PGQ1 229 aaPredicted RBP9.88□□□□□ -0.83
PDGFRA-208ENST00000509490 RNF207Q6ZRF8 634 aa9.88□□□□□ -0.83
PDGFRA-208ENST00000509490 HAUS6Q7Z4H7 955 aa9.88□□□□□ -0.83
PDGFRA-208ENST00000509490 TDRPQ86YL5 185 aa9.88□□□□□ -0.83
PDGFRA-208ENST00000509490 PARD3BQ8TEW8 1205 aa9.88□□□□□ -0.83
PDGFRA-208ENST00000509490 VCPIP1Q96JH7 1222 aa9.88□□□□□ -0.83
PDGFRA-208ENST00000509490 ANKRD27Q96NW4 1050 aa9.88□□□□□ -0.83
PDGFRA-208ENST00000509490 CBWD1Q9BRT8 395 aa9.88□□□□□ -0.83
PDGFRA-208ENST00000509490 TRIM31Q9BZY9 425 aa9.88□□□□□ -0.83
PDGFRA-208ENST00000509490 CDC42EP4Q9H3Q1 356 aaKnown RBP9.88□□□□□ -0.83
PDGFRA-208ENST00000509490 GINM1Q9NU53 330 aa9.88□□□□□ -0.83
PDGFRA-208ENST00000509490 USP15Q9Y4E8 981 aaPredicted RBP9.88□□□□□ -0.83
PDGFRA-208ENST00000509490 PSTPIP1O43586 416 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 WFS1O76024 890 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 ATP6V1G2O95670 118 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 CFBP00751 764 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 CYP1A1P04798 512 aaPredicted RBP9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 ADRB2P07550 413 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 RDXP35241 583 aaKnown RBP9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 COPB2P35606 906 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 JAK3P52333 1124 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 TCP10Q12799 353 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 CALCOCO2Q13137 446 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 GRIPAP1Q4V328 841 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 AADACL2Q6P093 401 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 MIER3Q7Z3K6 550 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 USP37Q86T82 979 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 MTMR14Q8NCE2 650 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 TRAIPQ9BWF2 469 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 CNTN6Q9UQ52 1028 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 PCDHAC2Q9Y5I4 1007 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 GARTP22102 1010 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 SFNP31947 248 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 PTPN7P35236 360 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 GCLMP48507 274 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 CCNG1P51959 295 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 CBLBQ13191 982 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 MESDQ14696 234 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 CCNG2Q16589 344 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 ASRGL1Q7L266 308 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 LDHDQ86WU2 507 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 MCF2L2Q86YR7 1114 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 KIAA0825Q8IV33 1275 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 OGFOD1Q8N543 542 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 EPS8L3Q8TE67 593 aaKnown RBP9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 CLEC4DQ8WXI8 215 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 DDX27Q96GQ7 796 aaKnown RBP9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 DCLK3Q9C098 648 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 CD248Q9HCU0 757 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 UBN1Q9NPG3 1134 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 PGAP2Q9UHJ9 254 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 WDR81Q562E7 1941 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 ASTN2O75129 1339 aaPredicted RBP9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 CNTNAP1P78357 1384 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 TCRBV7S2A1N4TA0A589 114 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 NDC80O14777 642 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 CCNB1P14635 433 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 ADSSP30520 456 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 CACNB3P54284 484 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 IKQ13123 557 aaPredicted RBP9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 NR1H3Q13133 447 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 AOC3Q16853 763 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 ZC3H12AQ5D1E8 599 aaKnown RBP9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 TRIM72Q6ZMU5 477 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 CCDC105Q8IYK2 499 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 TMEM161BQ8NDZ6 487 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 SEMA4DQ92854 862 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 NT5C1BQ96P26 610 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 KCNH7Q9NS40 1196 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 PARP14Q460N5 1801 aa9.87□□□□□ -0.83
PDGFRA-208ENST00000509490 LOC285556D6RIA3 1793 aa9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 BRWD3Q6RI45 1802 aa9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 CHMP2AO43633 222 aa9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 KIF1CO43896 1103 aaKnown RBP9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 STAT4Q14765 748 aa9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 SNRNP35Q16560 246 aaKnown RBP9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 TKFCQ3LXA3 575 aa9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 SLC47A2Q86VL8 602 aa9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 SEPT12Q8IYM1 358 aa9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 KATNAL2Q8IYT4 538 aa9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 MAB21L3Q8N8X9 362 aa9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 CCDC63Q8NA47 563 aa9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 FBXL13Q8NEE6 735 aa9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 ATL2Q8NHH9 583 aa9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 ZNF653Q96CK0 615 aa9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 MAGEB18Q96M61 343 aa9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 CSRNP1Q96S65 589 aa9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 PRMT1Q99873 361 aaKnown RBP9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 SELENOSQ9BQE4 189 aa9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 CXorf56Q9H5V9 222 aa9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 PDLIM7Q9NR12 457 aa9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 ARHGEF3Q9NR81 526 aa9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 FETUBQ9UGM5 382 aa9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 TBX20Q9UMR3 447 aa9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 ARL2BPQ9Y2Y0 163 aa9.86□□□□□ -0.83
PDGFRA-208ENST00000509490 MYPNQ86TC9 1320 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms