RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.97□□□□□ -0.65
NUP54-203ENST00000504173 SLC24A5Q71RS6 500 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 EPM2AIP1Q7L775 607 aaPredicted RBP10.97□□□□□ -0.65
NUP54-203ENST00000504173 APBB1IPQ7Z5R6 666 aaPredicted RBP10.97□□□□□ -0.65
NUP54-203ENST00000504173 RTN4RL1Q86UN2 441 aaPredicted RBP10.97□□□□□ -0.65
NUP54-203ENST00000504173 NELFCDQ8IXH7 590 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 MYOCDQ8IZQ8 938 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 ZNF507Q8TCN5 953 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 SCFD1Q8WVM8 642 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 NKD2Q969F2 451 aaPredicted RBP10.97□□□□□ -0.65
NUP54-203ENST00000504173 TCHPQ9BT92 498 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 GTPBP4Q9BZE4 634 aaKnown RBP10.97□□□□□ -0.65
NUP54-203ENST00000504173 FAM105AQ9NUU6 356 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 ANKFY1Q9P2R3 1169 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 TNFSF13BQ9Y275 285 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 FAM208BQ5VWN6 2430 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 CEP250Q9BV73 2442 aa10.96□□□□□ -0.65
NUP54-203ENST00000504173 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.96□□□□□ -0.65
NUP54-203ENST00000504173 C9IYK1 514 aa10.96□□□□□ -0.65
NUP54-203ENST00000504173 TOM1L1O75674 476 aa10.96□□□□□ -0.65
NUP54-203ENST00000504173 HARSP12081 509 aaKnown RBP10.96□□□□□ -0.65
NUP54-203ENST00000504173 SKIP12755 728 aa10.96□□□□□ -0.65
NUP54-203ENST00000504173 DEFB103AP81534 67 aa10.96□□□□□ -0.65
NUP54-203ENST00000504173 SIGLEC14Q08ET2 396 aa10.96□□□□□ -0.65
NUP54-203ENST00000504173 BMT2Q1RMZ1 405 aa10.96□□□□□ -0.65
NUP54-203ENST00000504173 SKOR2Q2VWA4 1001 aaPredicted RBP10.96□□□□□ -0.65
NUP54-203ENST00000504173 UBXN11Q5T124 520 aa10.96□□□□□ -0.65
NUP54-203ENST00000504173 MPZL3Q6UWV2 235 aa10.96□□□□□ -0.65
NUP54-203ENST00000504173 ZBTB33Q86T24 672 aa10.96□□□□□ -0.65
NUP54-203ENST00000504173 ECHDC2Q86YB7 292 aa10.96□□□□□ -0.65
NUP54-203ENST00000504173 SMYD4Q8IYR2 804 aaPredicted RBP10.96□□□□□ -0.65
NUP54-203ENST00000504173 HACE1Q8IYU2 909 aa10.96□□□□□ -0.65
NUP54-203ENST00000504173 TRIML1Q8N9V2 468 aa10.96□□□□□ -0.65
NUP54-203ENST00000504173 RNF169Q8NCN4 708 aa10.96□□□□□ -0.65
NUP54-203ENST00000504173 ASIC4Q96FT7 647 aa10.96□□□□□ -0.65
NUP54-203ENST00000504173 ZBTB45Q96K62 511 aaPredicted RBP10.96□□□□□ -0.65
NUP54-203ENST00000504173 EIF2AQ9BY44 585 aaKnown RBP10.96□□□□□ -0.65
NUP54-203ENST00000504173 LRFN2Q9ULH4 789 aa10.96□□□□□ -0.65
NUP54-203ENST00000504173 MAPK8IP1Q9UQF2 711 aa10.96□□□□□ -0.65
NUP54-203ENST00000504173 PCDHB2Q9Y5E7 798 aa10.96□□□□□ -0.65
NUP54-203ENST00000504173 ZMYM2Q9UBW7 1377 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 A0A0U1RQF3 1178 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 LINC01553A4QN01 128 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 TISP43B9A030 160 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 ANKRD63C9JTQ0 380 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 CLDN3O15551 220 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 UPP2O95045 317 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 STAG3L1P0CL83 205 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 MCF2P10911 925 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 PROZP22891 400 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 HOXD13P35453 343 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 STIM1Q13586 685 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 MORC3Q14149 939 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 NOLC1Q14978 699 aaKnown RBP eCLIP10.95□□□□□ -0.66
NUP54-203ENST00000504173 KNOP1Q1ED39 458 aaKnown RBP10.95□□□□□ -0.66
NUP54-203ENST00000504173 SLFN12LQ6IEE8 588 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 SLC39A4Q6P5W5 647 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 HS2ST1Q7LGA3 356 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 NPAS4Q8IUM7 802 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 GUF1Q8N442 669 aaKnown RBP10.95□□□□□ -0.66
NUP54-203ENST00000504173 PGBD4Q96DM1 585 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 MSTO1Q9BUK6 570 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 TRAIPQ9BWF2 469 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 GBP3Q9H0R5 595 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 CDT1Q9H211 546 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 IKZF4Q9H2S9 585 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 PTPRHQ9HD43 1115 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 TMEM63CQ9P1W3 806 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 IPPQ9Y573 584 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 PCDHB7Q9Y5E2 793 aa10.95□□□□□ -0.66
NUP54-203ENST00000504173 SETXQ7Z333 2677 aaKnown RBP10.94□□□□□ -0.66
NUP54-203ENST00000504173 ABLIM1O14639 778 aa10.94□□□□□ -0.66
NUP54-203ENST00000504173 NCK2O43639 380 aa10.94□□□□□ -0.66
NUP54-203ENST00000504173 ZNF623O75123 536 aa10.94□□□□□ -0.66
NUP54-203ENST00000504173 ITGA4P13612 1032 aa10.94□□□□□ -0.66
NUP54-203ENST00000504173 LTBRP36941 435 aa10.94□□□□□ -0.66
NUP54-203ENST00000504173 PPP1R2P41236 205 aa10.94□□□□□ -0.66
NUP54-203ENST00000504173 PRCPP42785 496 aa10.94□□□□□ -0.66
NUP54-203ENST00000504173 SNRPFP62306 86 aaKnown RBP10.94□□□□□ -0.66
NUP54-203ENST00000504173 FAM189BP81408 668 aa10.94□□□□□ -0.66
NUP54-203ENST00000504173 MCL1Q07820 350 aa10.94□□□□□ -0.66
NUP54-203ENST00000504173 PUM1Q14671 1186 aaKnown RBP eCLIP10.94□□□□□ -0.66
NUP54-203ENST00000504173 PTPROQ16827 1216 aa10.94□□□□□ -0.66
NUP54-203ENST00000504173 COBLL1Q53SF7 1204 aa10.94□□□□□ -0.66
NUP54-203ENST00000504173 FAM117BQ6P1L5 589 aa10.94□□□□□ -0.66
NUP54-203ENST00000504173 ARMCX5Q6P1M9 558 aa10.94□□□□□ -0.66
NUP54-203ENST00000504173 RBM43Q6ZSC3 357 aaKnown RBP10.94□□□□□ -0.66
NUP54-203ENST00000504173 THNSL1Q8IYQ7 743 aa10.94□□□□□ -0.66
NUP54-203ENST00000504173 SMG8Q8ND04 991 aaKnown RBP10.94□□□□□ -0.66
NUP54-203ENST00000504173 GOLGA5Q8TBA6 731 aa10.94□□□□□ -0.66
NUP54-203ENST00000504173 POMGNT1Q8WZA1 660 aa10.94□□□□□ -0.66
NUP54-203ENST00000504173 LPPQ93052 612 aa10.94□□□□□ -0.66
NUP54-203ENST00000504173 RAD9AQ99638 391 aa10.94□□□□□ -0.66
NUP54-203ENST00000504173 APOL6Q9BWW8 343 aa10.94□□□□□ -0.66
NUP54-203ENST00000504173 NXF3Q9H4D5 531 aaKnown RBP10.94□□□□□ -0.66
NUP54-203ENST00000504173 ELAC1Q9H777 363 aaKnown RBP10.94□□□□□ -0.66
NUP54-203ENST00000504173 TYW1Q9NV66 732 aaKnown RBP10.94□□□□□ -0.66
NUP54-203ENST00000504173 TMEM161AQ9NX61 479 aa10.94□□□□□ -0.66
NUP54-203ENST00000504173 TTC3P53804 2025 aa10.94□□□□□ -0.66
NUP54-203ENST00000504173 A0A0B4J269 797 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms