RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 FAM43BQ6ZT52 329 aaPredicted RBP12.36□□□□□ -0.43
MCF2L-231ENST00000494043 TMC6Q7Z403 805 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 WDR49Q8IV35 697 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 DRC7Q8IY82 874 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 SMG8Q8ND04 991 aaKnown RBP12.36□□□□□ -0.43
MCF2L-231ENST00000494043 FAM212AQ96EL1 285 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 SCLYQ96I15 445 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 SNX27Q96L92 541 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 POP1Q99575 1024 aaKnown RBP12.36□□□□□ -0.43
MCF2L-231ENST00000494043 ADAM2Q99965 735 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 ASB7Q9H672 318 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 MMRN2Q9H8L6 949 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 TMEM8AQ9HCN3 771 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 FAM105AQ9NUU6 356 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 SNTG2Q9NY99 539 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 SIK3Q9Y2K2 1263 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 HES2Q9Y543 173 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 PCDHB2Q9Y5E7 798 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 PTPRJQ12913 1337 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 ITIH6Q6UXX5 1313 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 TTC26A0AVF1 554 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 TRIM43BA6NCK2 446 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 LACTBL1A8MY62 500 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 TULP1O00294 542 aaPredicted RBP12.35□□□□□ -0.43
MCF2L-231ENST00000494043 P4HA2O15460 535 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 RECQL4O94761 1208 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 TNNI1P19237 187 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 RFC2P35250 354 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 AP3M2P53677 418 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 YARSP54577 528 aaKnown RBP12.35□□□□□ -0.43
MCF2L-231ENST00000494043 SLC10A6Q3KNW5 377 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 LMBRD2Q68DH5 695 aaPredicted RBP12.35□□□□□ -0.43
MCF2L-231ENST00000494043 KRT39Q6A163 491 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 GBP6Q6ZN66 633 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 C15orf39Q6ZRI6 1047 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 CD302Q8IX05 232 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 HACE1Q8IYU2 909 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 SPC24Q8NBT2 197 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 LINC01599Q8WXQ3 324 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 SEPT8Q92599 483 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 APBB2Q92870 758 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 TRIM43Q96BQ3 446 aaPredicted RBP12.35□□□□□ -0.43
MCF2L-231ENST00000494043 PPP1R9BQ96SB3 815 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 APOL6Q9BWW8 343 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 FTHL17Q9BXU8 183 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 TMEM117Q9H0C3 514 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 PLEKHA5Q9HAU0 1116 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 PRDM5Q9NQX1 630 aaPredicted RBP12.35□□□□□ -0.43
MCF2L-231ENST00000494043 RGS18Q9NS28 235 aa12.35□□□□□ -0.43
MCF2L-231ENST00000494043 MKI67P46013 3256 aaKnown RBP12.35□□□□□ -0.43
MCF2L-231ENST00000494043 RALGAPA2Q2PPJ7 1873 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 A0A0U1RQF3 1178 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 ZNF623O75123 536 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 TIMP1P01033 207 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 NFICP08651 508 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 SKIP12755 728 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 AKAP5P24588 427 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 KLK7P49862 253 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 KCNMA1Q12791 1236 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 CETN1Q12798 172 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 EXOC3L4Q17RC7 722 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 ZACNQ401N2 412 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 EPC2Q52LR7 807 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 COL13A1Q5TAT6 717 aaPredicted RBP12.34□□□□□ -0.43
MCF2L-231ENST00000494043 JADE1Q6IE81 842 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 SV2AQ7L0J3 742 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 MRPL10Q7Z7H8 261 aaKnown RBP12.34□□□□□ -0.43
MCF2L-231ENST00000494043 EFCAB13Q8IY85 973 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 DBF4BQ8NFT6 615 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 OR5B17Q8NGF7 314 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 ZNF516Q92618 1163 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 FAM84AQ96KN4 292 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 CRACR2AQ9BSW2 395 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 TSPYL2Q9H2G4 693 aaPredicted RBP12.34□□□□□ -0.43
MCF2L-231ENST00000494043 RNF39Q9H2S5 420 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 GCNT4Q9P109 453 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 CNTN3Q9P232 1028 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 PARP2Q9UGN5 583 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 DERAQ9Y315 318 aa12.34□□□□□ -0.43
MCF2L-231ENST00000494043 C9IYK1 514 aa12.33□□□□□ -0.44
MCF2L-231ENST00000494043 C4BPAP04003 597 aaKnown RBP12.33□□□□□ -0.44
MCF2L-231ENST00000494043 TMEM191BP0C7N4 346 aa12.33□□□□□ -0.44
MCF2L-231ENST00000494043 ITGA4P13612 1032 aa12.33□□□□□ -0.44
MCF2L-231ENST00000494043 KCNE1P15382 129 aa12.33□□□□□ -0.44
MCF2L-231ENST00000494043 ATF7P17544 494 aaPredicted RBP12.33□□□□□ -0.44
MCF2L-231ENST00000494043 PON1P27169 355 aa12.33□□□□□ -0.44
MCF2L-231ENST00000494043 TFAMQ00059 246 aaKnown RBP12.33□□□□□ -0.44
MCF2L-231ENST00000494043 TBX2Q13207 712 aaPredicted RBP12.33□□□□□ -0.44
MCF2L-231ENST00000494043 TRIM14Q14142 442 aa12.33□□□□□ -0.44
MCF2L-231ENST00000494043 TMEM132DQ14C87 1099 aa12.33□□□□□ -0.44
MCF2L-231ENST00000494043 DUOXA2Q1HG44 320 aa12.33□□□□□ -0.44
MCF2L-231ENST00000494043 TCTN1Q2MV58 587 aa12.33□□□□□ -0.44
MCF2L-231ENST00000494043 XKR4Q5GH76 650 aa12.33□□□□□ -0.44
MCF2L-231ENST00000494043 TDRD10Q5VZ19 366 aaKnown RBP12.33□□□□□ -0.44
MCF2L-231ENST00000494043 ALKAL1Q6UXT8 129 aa12.33□□□□□ -0.44
MCF2L-231ENST00000494043 RTN4RL1Q86UN2 441 aaPredicted RBP12.33□□□□□ -0.44
MCF2L-231ENST00000494043 ECHDC2Q86YB7 292 aa12.33□□□□□ -0.44
MCF2L-231ENST00000494043 NT5DC4Q86YG4 428 aa12.33□□□□□ -0.44
MCF2L-231ENST00000494043 ABHD8Q96I13 439 aa12.33□□□□□ -0.44
MCF2L-231ENST00000494043 ANKRD36BP1Q96IX9 119 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms