RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 SFR1Q86XK3 245 aa19.86■□□□□ 0.77
COL9A3-214ENST00000490398 SMRP1Q8NCR6 262 aa19.86■□□□□ 0.77
COL9A3-214ENST00000490398 SLC22A17Q8WUG5 538 aa19.86■□□□□ 0.77
COL9A3-214ENST00000490398 KCNN1Q92952 543 aa19.86■□□□□ 0.77
COL9A3-214ENST00000490398 KLHL5Q96PQ7 755 aa19.86■□□□□ 0.77
COL9A3-214ENST00000490398 COLEC11Q9BWP8 271 aa19.86■□□□□ 0.77
COL9A3-214ENST00000490398 S1PR5Q9H228 398 aa19.86■□□□□ 0.77
COL9A3-214ENST00000490398 SMIM28A0A1B0GU29 152 aa19.85■□□□□ 0.77
COL9A3-214ENST00000490398 TISP43B9A030 160 aa19.85■□□□□ 0.77
COL9A3-214ENST00000490398 CUTAO60888 179 aa19.85■□□□□ 0.77
COL9A3-214ENST00000490398 TOM1L1O75674 476 aa19.85■□□□□ 0.77
COL9A3-214ENST00000490398 CNPP09543 421 aaKnown RBP19.85■□□□□ 0.77
COL9A3-214ENST00000490398 PUS10Q3MIT2 529 aaKnown RBP19.85■□□□□ 0.77
COL9A3-214ENST00000490398 XKR4Q5GH76 650 aa19.85■□□□□ 0.77
COL9A3-214ENST00000490398 KIAA0319Q5VV43 1072 aa19.85■□□□□ 0.77
COL9A3-214ENST00000490398 FUT10Q6P4F1 479 aa19.85■□□□□ 0.77
COL9A3-214ENST00000490398 CD300LGQ6UXG3 332 aa19.85■□□□□ 0.77
COL9A3-214ENST00000490398 ZPBP2Q6X784 338 aa19.85■□□□□ 0.77
COL9A3-214ENST00000490398 CCDC73Q6ZRK6 1079 aa19.85■□□□□ 0.77
COL9A3-214ENST00000490398 SV2BQ7L1I2 683 aa19.85■□□□□ 0.77
COL9A3-214ENST00000490398 C12orf76Q8N812 135 aaPredicted RBP19.85■□□□□ 0.77
COL9A3-214ENST00000490398 SNX27Q96L92 541 aa19.85■□□□□ 0.77
COL9A3-214ENST00000490398 FGFBP2Q9BYJ0 223 aa19.85■□□□□ 0.77
COL9A3-214ENST00000490398 KCNG1Q9UIX4 513 aa19.85■□□□□ 0.77
COL9A3-214ENST00000490398 PCDHA7Q9UN72 937 aa19.85■□□□□ 0.77
COL9A3-214ENST00000490398 USP15Q9Y4E8 981 aaPredicted RBP19.85■□□□□ 0.77
COL9A3-214ENST00000490398 TDRD15B5MCY1 1934 aaKnown RBP19.84■□□□□ 0.77
COL9A3-214ENST00000490398 CARNS1A5YM72 827 aa19.84■□□□□ 0.77
COL9A3-214ENST00000490398 ANKRD63C9JTQ0 380 aa19.84■□□□□ 0.77
COL9A3-214ENST00000490398 TNFSF9P41273 254 aa19.84■□□□□ 0.77
COL9A3-214ENST00000490398 GTF2BQ00403 316 aa19.84■□□□□ 0.77
COL9A3-214ENST00000490398 ZP2Q05996 745 aa19.84■□□□□ 0.77
COL9A3-214ENST00000490398 MCL1Q07820 350 aa19.84■□□□□ 0.77
COL9A3-214ENST00000490398 NOLC1Q14978 699 aaKnown RBP eCLIP19.84■□□□□ 0.77
COL9A3-214ENST00000490398 SLC10A6Q3KNW5 377 aa19.84■□□□□ 0.77
COL9A3-214ENST00000490398 CCDC94Q9BW85 323 aaPredicted RBP19.84■□□□□ 0.77
COL9A3-214ENST00000490398 CHST7Q9NS84 486 aa19.84■□□□□ 0.77
COL9A3-214ENST00000490398 TBC1D7Q9P0N9 293 aa19.84■□□□□ 0.77
COL9A3-214ENST00000490398 ADAM28Q9UKQ2 775 aa19.84■□□□□ 0.77
COL9A3-214ENST00000490398 NCOR1O75376 2440 aa19.84■□□□□ 0.77
COL9A3-214ENST00000490398 FAM189A1O60320 539 aa19.83■□□□□ 0.77
COL9A3-214ENST00000490398 NR1I2O75469 434 aa19.83■□□□□ 0.77
COL9A3-214ENST00000490398 TADA2AO75478 443 aa19.83■□□□□ 0.77
COL9A3-214ENST00000490398 PIGRP01833 764 aa19.83■□□□□ 0.77
COL9A3-214ENST00000490398 CLCNKBP51801 687 aa19.83■□□□□ 0.77
COL9A3-214ENST00000490398 KCNA1Q09470 495 aa19.83■□□□□ 0.77
COL9A3-214ENST00000490398 RTP2Q5QGT7 225 aa19.83■□□□□ 0.77
COL9A3-214ENST00000490398 C3orf58Q8NDZ4 430 aa19.83■□□□□ 0.77
COL9A3-214ENST00000490398 C18orf25Q96B23 403 aaPredicted RBP19.83■□□□□ 0.77
COL9A3-214ENST00000490398 BICD1Q96G01 975 aa19.83■□□□□ 0.77
COL9A3-214ENST00000490398 ACAP3Q96P50 834 aa19.83■□□□□ 0.77
COL9A3-214ENST00000490398 RCOR1Q9UKL0 485 aa19.83■□□□□ 0.77
COL9A3-214ENST00000490398 MYH11P35749 1972 aa19.83■□□□□ 0.76
COL9A3-214ENST00000490398 TEX28O15482 410 aa19.82■□□□□ 0.76
COL9A3-214ENST00000490398 CLDN3O15551 220 aa19.82■□□□□ 0.76
COL9A3-214ENST00000490398 URODP06132 367 aa19.82■□□□□ 0.76
COL9A3-214ENST00000490398 WEE2P0C1S8 567 aa19.82■□□□□ 0.76
COL9A3-214ENST00000490398 MYBP10242 640 aa19.82■□□□□ 0.76
COL9A3-214ENST00000490398 PDIA4P13667 645 aaKnown RBP19.82■□□□□ 0.76
COL9A3-214ENST00000490398 GLUD2P49448 558 aa19.82■□□□□ 0.76
COL9A3-214ENST00000490398 LIG4P49917 911 aa19.82■□□□□ 0.76
COL9A3-214ENST00000490398 CASP5P51878 434 aa19.82■□□□□ 0.76
COL9A3-214ENST00000490398 YARSP54577 528 aaKnown RBP19.82■□□□□ 0.76
COL9A3-214ENST00000490398 DSG1Q02413 1049 aa19.82■□□□□ 0.76
COL9A3-214ENST00000490398 SPAG1Q07617 926 aa19.82■□□□□ 0.76
COL9A3-214ENST00000490398 ZNF720Q7Z2F6 126 aa19.82■□□□□ 0.76
COL9A3-214ENST00000490398 APBB1IPQ7Z5R6 666 aaPredicted RBP19.82■□□□□ 0.76
COL9A3-214ENST00000490398 MAP4K3Q8IVH8 894 aa19.82■□□□□ 0.76
COL9A3-214ENST00000490398 GJD3Q8N144 294 aa19.82■□□□□ 0.76
COL9A3-214ENST00000490398 SUSD6Q92537 303 aa19.82■□□□□ 0.76
COL9A3-214ENST00000490398 HPS3Q969F9 1004 aa19.82■□□□□ 0.76
COL9A3-214ENST00000490398 DHX58Q96C10 678 aa19.82■□□□□ 0.76
COL9A3-214ENST00000490398 STRA6Q9BX79 667 aa19.82■□□□□ 0.76
COL9A3-214ENST00000490398 MRPL17Q9NRX2 175 aaKnown RBP19.82■□□□□ 0.76
COL9A3-214ENST00000490398 H0YCG3 227 aa19.81■□□□□ 0.76
COL9A3-214ENST00000490398 HNRNPDLO14979 420 aaKnown RBP19.81■□□□□ 0.76
COL9A3-214ENST00000490398 PPP1R37O75864 691 aa19.81■□□□□ 0.76
COL9A3-214ENST00000490398 CXCL8P10145 99 aa19.81■□□□□ 0.76
COL9A3-214ENST00000490398 RPL17P18621 184 aaKnown RBP19.81■□□□□ 0.76
COL9A3-214ENST00000490398 KLRC2P26717 231 aa19.81■□□□□ 0.76
COL9A3-214ENST00000490398 MATR3P43243 847 aaKnown RBP eCLIP19.81■□□□□ 0.76
COL9A3-214ENST00000490398 PRSS55Q6UWB4 352 aaPredicted RBP19.81■□□□□ 0.76
COL9A3-214ENST00000490398 GLIS3Q8NEA6 775 aa19.81■□□□□ 0.76
COL9A3-214ENST00000490398 KCNG4Q8TDN1 519 aa19.81■□□□□ 0.76
COL9A3-214ENST00000490398 CASP10Q92851 521 aa19.81■□□□□ 0.76
COL9A3-214ENST00000490398 RXFP1Q9HBX9 757 aa19.81■□□□□ 0.76
COL9A3-214ENST00000490398 CNTN3Q9P232 1028 aa19.81■□□□□ 0.76
COL9A3-214ENST00000490398 FRMD3A2A2Y4 597 aa19.8■□□□□ 0.76
COL9A3-214ENST00000490398 C19orf67A6NJJ6 358 aa19.8■□□□□ 0.76
COL9A3-214ENST00000490398 I3L4J1 428 aa19.8■□□□□ 0.76
COL9A3-214ENST00000490398 IDEP14735 1019 aa19.8■□□□□ 0.76
COL9A3-214ENST00000490398 KCNE1P15382 129 aa19.8■□□□□ 0.76
COL9A3-214ENST00000490398 CASP1P29466 404 aa19.8■□□□□ 0.76
COL9A3-214ENST00000490398 ME1P48163 572 aa19.8■□□□□ 0.76
COL9A3-214ENST00000490398 CLCN4P51793 760 aa19.8■□□□□ 0.76
COL9A3-214ENST00000490398 BMS1Q14692 1282 aaKnown RBP19.8■□□□□ 0.76
COL9A3-214ENST00000490398 UPP1Q16831 310 aa19.8■□□□□ 0.76
COL9A3-214ENST00000490398 USP41Q3LFD5 358 aa19.8■□□□□ 0.76
COL9A3-214ENST00000490398 FAM171A1Q5VUB5 890 aa19.8■□□□□ 0.76
COL9A3-214ENST00000490398 ADHFE1Q8IWW8 467 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms