RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ALDH1A3P47895 512 aa7.83□□□□□ -1.16
USP40-213ENST00000483216 EPHB1P54762 984 aa7.83□□□□□ -1.16
USP40-213ENST00000483216 CDC42EP1Q00587 391 aa7.83□□□□□ -1.16
USP40-213ENST00000483216 FOXE3Q13461 319 aa7.83□□□□□ -1.16
USP40-213ENST00000483216 TOB2Q14106 344 aaPredicted RBP7.83□□□□□ -1.16
USP40-213ENST00000483216 MIIPQ5JXC2 388 aa7.83□□□□□ -1.16
USP40-213ENST00000483216 PPP4R3AQ6IN85 833 aa7.83□□□□□ -1.16
USP40-213ENST00000483216 ZGPATQ8N5A5 531 aaKnown RBP7.83□□□□□ -1.16
USP40-213ENST00000483216 HSPBAP1Q96EW2 488 aa7.83□□□□□ -1.16
USP40-213ENST00000483216 ZNF503Q96F45 646 aa7.83□□□□□ -1.16
USP40-213ENST00000483216 NUP88Q99567 741 aaPredicted RBP7.83□□□□□ -1.16
USP40-213ENST00000483216 NDC1Q9BTX1 674 aa7.83□□□□□ -1.16
USP40-213ENST00000483216 MRI1Q9BV20 369 aa7.83□□□□□ -1.16
USP40-213ENST00000483216 TDP1Q9NUW8 608 aa7.83□□□□□ -1.16
USP40-213ENST00000483216 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.83□□□□□ -1.16
USP40-213ENST00000483216 ACTL7AQ9Y615 435 aa7.83□□□□□ -1.16
USP40-213ENST00000483216 PNPLA7Q6ZV29 1317 aa7.82□□□□□ -1.16
USP40-213ENST00000483216 RAP2AP10114 183 aa7.82□□□□□ -1.16
USP40-213ENST00000483216 ATP5JP18859 108 aa7.82□□□□□ -1.16
USP40-213ENST00000483216 PIN1Q13526 163 aaPredicted RBP7.82□□□□□ -1.16
USP40-213ENST00000483216 IL10RAQ13651 578 aa7.82□□□□□ -1.16
USP40-213ENST00000483216 PUM1Q14671 1186 aaKnown RBP eCLIP7.82□□□□□ -1.16
USP40-213ENST00000483216 RABL3Q5HYI8 236 aa7.82□□□□□ -1.16
USP40-213ENST00000483216 ATXN7L2Q5T6C5 722 aaPredicted RBP7.82□□□□□ -1.16
USP40-213ENST00000483216 SEM1Q6ZVN7 128 aa7.82□□□□□ -1.16
USP40-213ENST00000483216 DRC7Q8IY82 874 aa7.82□□□□□ -1.16
USP40-213ENST00000483216 OR10H5Q8NGA6 315 aa7.82□□□□□ -1.16
USP40-213ENST00000483216 CACTINQ8WUQ7 758 aaKnown RBP7.82□□□□□ -1.16
USP40-213ENST00000483216 ANKRD6Q9Y2G4 727 aa7.82□□□□□ -1.16
USP40-213ENST00000483216 CFAP20Q9Y6A4 193 aaKnown RBP7.82□□□□□ -1.16
USP40-213ENST00000483216 TRIM24O15164 1050 aa7.81□□□□□ -1.16
USP40-213ENST00000483216 IL33O95760 270 aa7.81□□□□□ -1.16
USP40-213ENST00000483216 RPLP2P05387 115 aaKnown RBP7.81□□□□□ -1.16
USP40-213ENST00000483216 C1SP09871 688 aa7.81□□□□□ -1.16
USP40-213ENST00000483216 TNFRSF1AP19438 455 aa7.81□□□□□ -1.16
USP40-213ENST00000483216 CTXN1P60606 82 aa7.81□□□□□ -1.16
USP40-213ENST00000483216 TARDBPQ13148 414 aaKnown RBP eCLIP7.81□□□□□ -1.16
USP40-213ENST00000483216 ODR4Q5SWX8 454 aa7.81□□□□□ -1.16
USP40-213ENST00000483216 GGNQ86UU5 652 aa7.81□□□□□ -1.16
USP40-213ENST00000483216 SYT12Q8IV01 421 aa7.81□□□□□ -1.16
USP40-213ENST00000483216 PLEKHG4BQ96PX9 1271 aa7.81□□□□□ -1.16
USP40-213ENST00000483216 CAMKK2Q96RR4 588 aa7.81□□□□□ -1.16
USP40-213ENST00000483216 POGKQ9P215 609 aa7.81□□□□□ -1.16
USP40-213ENST00000483216 IP6K2Q9UHH9 426 aa7.81□□□□□ -1.16
USP40-213ENST00000483216 SLC23A1Q9UHI7 598 aa7.81□□□□□ -1.16
USP40-213ENST00000483216 PCDHB1Q9Y5F3 818 aa7.81□□□□□ -1.16
USP40-213ENST00000483216 AKAP10O43572 662 aa7.8□□□□□ -1.16
USP40-213ENST00000483216 RECQL4O94761 1208 aa7.8□□□□□ -1.16
USP40-213ENST00000483216 PEX11BO96011 259 aa7.8□□□□□ -1.16
USP40-213ENST00000483216 AKAP5P24588 427 aa7.8□□□□□ -1.16
USP40-213ENST00000483216 RSPH3Q86UC2 560 aa7.8□□□□□ -1.16
USP40-213ENST00000483216 PLXDC1Q8IUK5 500 aa7.8□□□□□ -1.16
USP40-213ENST00000483216 PRR18Q8N4B5 295 aa7.8□□□□□ -1.16
USP40-213ENST00000483216 RNF169Q8NCN4 708 aa7.8□□□□□ -1.16
USP40-213ENST00000483216 DCLRE1CQ96SD1 692 aaKnown RBP7.8□□□□□ -1.16
USP40-213ENST00000483216 ZNF747Q9BV97 191 aa7.8□□□□□ -1.16
USP40-213ENST00000483216 KRTAP4-7Q9BYR0 210 aa7.8□□□□□ -1.16
USP40-213ENST00000483216 DRGXA6NNA5 263 aa7.79□□□□□ -1.16
USP40-213ENST00000483216 DIRC3C9JPN6 131 aa7.79□□□□□ -1.16
USP40-213ENST00000483216 POMCP01189 267 aa7.79□□□□□ -1.16
USP40-213ENST00000483216 AMHP03971 560 aa7.79□□□□□ -1.16
USP40-213ENST00000483216 POU2F2P09086 479 aa7.79□□□□□ -1.16
USP40-213ENST00000483216 PDCP20941 246 aa7.79□□□□□ -1.16
USP40-213ENST00000483216 RAB27AP51159 221 aa7.79□□□□□ -1.16
USP40-213ENST00000483216 RAB39AQ14964 217 aa7.79□□□□□ -1.16
USP40-213ENST00000483216 DACT2Q5SW24 774 aa7.79□□□□□ -1.16
USP40-213ENST00000483216 TTC7BQ86TV6 843 aa7.79□□□□□ -1.16
USP40-213ENST00000483216 IFI44Q8TCB0 444 aa7.79□□□□□ -1.16
USP40-213ENST00000483216 NSUN6Q8TEA1 469 aaKnown RBP7.79□□□□□ -1.16
USP40-213ENST00000483216 KAT5Q92993 513 aa7.79□□□□□ -1.16
USP40-213ENST00000483216 TMX3Q96JJ7 454 aa7.79□□□□□ -1.16
USP40-213ENST00000483216 MRGPRX4Q96LA9 322 aa7.79□□□□□ -1.16
USP40-213ENST00000483216 DMRTA2Q96SC8 542 aa7.79□□□□□ -1.16
USP40-213ENST00000483216 RHOBTB2Q9BYZ6 727 aa7.79□□□□□ -1.16
USP40-213ENST00000483216 CALCOCO1Q9P1Z2 691 aa7.79□□□□□ -1.16
USP40-213ENST00000483216 EIF2B4Q9UI10 523 aaKnown RBP7.79□□□□□ -1.16
USP40-213ENST00000483216 SORCS3Q9UPU3 1222 aa7.79□□□□□ -1.16
USP40-213ENST00000483216 THRAP3Q9Y2W1 955 aaKnown RBP7.79□□□□□ -1.16
USP40-213ENST00000483216 LEFTY2O00292 366 aa7.78□□□□□ -1.16
USP40-213ENST00000483216 DTNBO60941 627 aa7.78□□□□□ -1.16
USP40-213ENST00000483216 S100BP04271 92 aaPredicted RBP7.78□□□□□ -1.16
USP40-213ENST00000483216 ZSCAN20P17040 1043 aaPredicted RBP7.78□□□□□ -1.16
USP40-213ENST00000483216 APOBEC3AP31941 199 aaPredicted RBP7.78□□□□□ -1.16
USP40-213ENST00000483216 RAP2BP61225 183 aa7.78□□□□□ -1.16
USP40-213ENST00000483216 SLC25A3Q00325 362 aa7.78□□□□□ -1.16
USP40-213ENST00000483216 DSC2Q02487 901 aa7.78□□□□□ -1.16
USP40-213ENST00000483216 NHLH2Q02577 135 aa7.78□□□□□ -1.16
USP40-213ENST00000483216 ATP2B3Q16720 1220 aa7.78□□□□□ -1.16
USP40-213ENST00000483216 ZNF529Q6P280 563 aa7.78□□□□□ -1.16
USP40-213ENST00000483216 USP45Q70EL2 814 aa7.78□□□□□ -1.16
USP40-213ENST00000483216 MYOCQ99972 504 aa7.78□□□□□ -1.16
USP40-213ENST00000483216 CDH19Q9H159 772 aa7.78□□□□□ -1.16
USP40-213ENST00000483216 VPS11Q9H270 941 aa7.78□□□□□ -1.16
USP40-213ENST00000483216 PNMA8BQ9ULN7 279 aaPredicted RBP7.78□□□□□ -1.16
USP40-213ENST00000483216 RUVBL1Q9Y265 456 aaKnown RBP7.78□□□□□ -1.16
USP40-213ENST00000483216 PF4V1P10720 104 aa7.77□□□□□ -1.17
USP40-213ENST00000483216 DGCR2P98153 550 aa7.77□□□□□ -1.17
USP40-213ENST00000483216 UBXN2BQ14CS0 331 aa7.77□□□□□ -1.17
USP40-213ENST00000483216 METRNLQ641Q3 311 aa7.77□□□□□ -1.17
USP40-213ENST00000483216 CRIP3Q6Q6R5 217 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms