RNA–Protein interactions for RNA: ENST00000476625.5

HDAC6-219, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-219ENST00000476625 DLL3Q9NYJ7 618 aa13.27□□□□□ -0.29
HDAC6-219ENST00000476625 TPCN1Q9ULQ1 816 aa13.27□□□□□ -0.29
HDAC6-219ENST00000476625 GDAQ9Y2T3 454 aa13.27□□□□□ -0.29
HDAC6-219ENST00000476625 SF3B1O75533 1304 aaKnown RBP eCLIP13.27□□□□□ -0.29
HDAC6-219ENST00000476625 CACNA1AO00555 2505 aa13.26□□□□□ -0.29
HDAC6-219ENST00000476625 TBX3O15119 743 aa13.26□□□□□ -0.29
HDAC6-219ENST00000476625 NR1I2O75469 434 aa13.26□□□□□ -0.29
HDAC6-219ENST00000476625 FDPSP14324 419 aaKnown RBP13.26□□□□□ -0.29
HDAC6-219ENST00000476625 GCFC2P16383 781 aaKnown RBP13.26□□□□□ -0.29
HDAC6-219ENST00000476625 CEBPBP17676 345 aa13.26□□□□□ -0.29
HDAC6-219ENST00000476625 HOXC13P31276 330 aa13.26□□□□□ -0.29
HDAC6-219ENST00000476625 OR1D2P34982 312 aa13.26□□□□□ -0.29
HDAC6-219ENST00000476625 TXKP42681 527 aa13.26□□□□□ -0.29
HDAC6-219ENST00000476625 TUSC3Q13454 348 aa13.26□□□□□ -0.29
HDAC6-219ENST00000476625 LPAL2Q16609 132 aa13.26□□□□□ -0.29
HDAC6-219ENST00000476625 AXDND1Q5T1B0 1012 aaPredicted RBP13.26□□□□□ -0.29
HDAC6-219ENST00000476625 GALNT17Q6IS24 598 aa13.26□□□□□ -0.29
HDAC6-219ENST00000476625 ELMSAN1Q6PJG2 1045 aa13.26□□□□□ -0.29
HDAC6-219ENST00000476625 TPRG1Q6ZUI0 275 aa13.26□□□□□ -0.29
HDAC6-219ENST00000476625 NECAB1Q8N987 351 aa13.26□□□□□ -0.29
HDAC6-219ENST00000476625 C3orf58Q8NDZ4 430 aa13.26□□□□□ -0.29
HDAC6-219ENST00000476625 PIK3R5Q8WYR1 880 aa13.26□□□□□ -0.29
HDAC6-219ENST00000476625 DDX23Q9BUQ8 820 aaKnown RBP13.26□□□□□ -0.29
HDAC6-219ENST00000476625 TMEM60Q9H2L4 133 aa13.26□□□□□ -0.29
HDAC6-219ENST00000476625 LTB4R2Q9NPC1 389 aa13.26□□□□□ -0.29
HDAC6-219ENST00000476625 HEBP1Q9NRV9 189 aa13.26□□□□□ -0.29
HDAC6-219ENST00000476625 PDRG1Q9NUG6 133 aa13.26□□□□□ -0.29
HDAC6-219ENST00000476625 DPP7Q9UHL4 492 aa13.26□□□□□ -0.29
HDAC6-219ENST00000476625 KIF26AQ9ULI4 1882 aaPredicted RBP13.26□□□□□ -0.29
HDAC6-219ENST00000476625 PPME1Q9Y570 386 aa13.26□□□□□ -0.29
HDAC6-219ENST00000476625 WDR87Q6ZQQ6 2873 aa13.26□□□□□ -0.29
HDAC6-219ENST00000476625 NCANO14594 1321 aa13.25□□□□□ -0.29
HDAC6-219ENST00000476625 KINO60870 393 aaKnown RBP13.25□□□□□ -0.29
HDAC6-219ENST00000476625 MED24O75448 989 aa13.25□□□□□ -0.29
HDAC6-219ENST00000476625 DGAT1O75907 488 aa13.25□□□□□ -0.29
HDAC6-219ENST00000476625 TKTP29401 623 aaKnown RBP13.25□□□□□ -0.29
HDAC6-219ENST00000476625 BRCC3P46736 316 aa13.25□□□□□ -0.29
HDAC6-219ENST00000476625 GRM2Q14416 872 aa13.25□□□□□ -0.29
HDAC6-219ENST00000476625 PUM1Q14671 1186 aaKnown RBP eCLIP13.25□□□□□ -0.29
HDAC6-219ENST00000476625 LIN9Q5TKA1 542 aa13.25□□□□□ -0.29
HDAC6-219ENST00000476625 ZC3H14Q6PJT7 736 aaKnown RBP13.25□□□□□ -0.29
HDAC6-219ENST00000476625 TCEAL4Q96EI5 215 aa13.25□□□□□ -0.29
HDAC6-219ENST00000476625 SEMA4AQ9H3S1 761 aa13.25□□□□□ -0.29
HDAC6-219ENST00000476625 TTC12Q9H892 705 aaPredicted RBP13.25□□□□□ -0.29
HDAC6-219ENST00000476625 PARD6AQ9NPB6 346 aa13.25□□□□□ -0.29
HDAC6-219ENST00000476625 NCDNQ9UBB6 729 aa13.25□□□□□ -0.29
HDAC6-219ENST00000476625 CDY1Q9Y6F8 540 aa13.25□□□□□ -0.29
HDAC6-219ENST00000476625 OTOGLQ3ZCN5 2332 aa13.24□□□□□ -0.29
HDAC6-219ENST00000476625 STK36Q9NRP7 1315 aa13.24□□□□□ -0.29
HDAC6-219ENST00000476625 LAMTOR5O43504 91 aa13.24□□□□□ -0.29
HDAC6-219ENST00000476625 SPATA31C1P0DKV0 1188 aa13.24□□□□□ -0.29
HDAC6-219ENST00000476625 CLCNKBP51801 687 aa13.24□□□□□ -0.29
HDAC6-219ENST00000476625 SOX4Q06945 474 aaPredicted RBP13.24□□□□□ -0.29
HDAC6-219ENST00000476625 NCBP1Q09161 790 aaKnown RBP13.24□□□□□ -0.29
HDAC6-219ENST00000476625 FZD5Q13467 585 aa13.24□□□□□ -0.29
HDAC6-219ENST00000476625 CALCRLQ16602 461 aa13.24□□□□□ -0.29
HDAC6-219ENST00000476625 PABPC1LQ4VXU2 614 aaKnown RBP13.24□□□□□ -0.29
HDAC6-219ENST00000476625 VARS2Q5ST30 1063 aaKnown RBP13.24□□□□□ -0.29
HDAC6-219ENST00000476625 TANGO2Q6ICL3 276 aa13.24□□□□□ -0.29
HDAC6-219ENST00000476625 EXOC8Q8IYI6 725 aa13.24□□□□□ -0.29
HDAC6-219ENST00000476625 CEP120Q8N960 986 aa13.24□□□□□ -0.29
HDAC6-219ENST00000476625 DDX27Q96GQ7 796 aaKnown RBP13.24□□□□□ -0.29
HDAC6-219ENST00000476625 BCO2Q9BYV7 579 aa13.24□□□□□ -0.29
HDAC6-219ENST00000476625 ANKEF1Q9NU02 776 aa13.24□□□□□ -0.29
HDAC6-219ENST00000476625 ORC3Q9UBD5 711 aaPredicted RBP13.24□□□□□ -0.29
HDAC6-219ENST00000476625 NDRG2Q9UN36 371 aaKnown RBP13.24□□□□□ -0.29
HDAC6-219ENST00000476625 PCDHA12Q9UN75 941 aa13.24□□□□□ -0.29
HDAC6-219ENST00000476625 DCDC2BA2VCK2 349 aa13.23□□□□□ -0.29
HDAC6-219ENST00000476625 BTBD18B2RXH4 712 aa13.23□□□□□ -0.29
HDAC6-219ENST00000476625 LYPLA2O95372 231 aa13.23□□□□□ -0.29
HDAC6-219ENST00000476625 BAG4O95429 457 aaKnown RBP13.23□□□□□ -0.29
HDAC6-219ENST00000476625 THP07101 528 aa13.23□□□□□ -0.29
HDAC6-219ENST00000476625 ATP2B1P20020 1258 aa13.23□□□□□ -0.29
HDAC6-219ENST00000476625 FCARP24071 287 aa13.23□□□□□ -0.29
HDAC6-219ENST00000476625 KRT2P35908 639 aa13.23□□□□□ -0.29
HDAC6-219ENST00000476625 ATXN1P54253 815 aaKnown RBP13.23□□□□□ -0.29
HDAC6-219ENST00000476625 POU5F1BQ06416 359 aa13.23□□□□□ -0.29
HDAC6-219ENST00000476625 TMEM132AQ24JP5 1023 aa13.23□□□□□ -0.29
HDAC6-219ENST00000476625 CDCA2Q69YH5 1023 aaPredicted RBP13.23□□□□□ -0.29
HDAC6-219ENST00000476625 CPLX2Q6PUV4 134 aaKnown RBP13.23□□□□□ -0.29
HDAC6-219ENST00000476625 PPP4R3CPQ6ZMV5 832 aa13.23□□□□□ -0.29
HDAC6-219ENST00000476625 SLFN12Q8IYM2 578 aa13.23□□□□□ -0.29
HDAC6-219ENST00000476625 HACE1Q8IYU2 909 aa13.23□□□□□ -0.29
HDAC6-219ENST00000476625 CCDC43Q96MW1 224 aaKnown RBP13.23□□□□□ -0.29
HDAC6-219ENST00000476625 NFKBIZQ9BYH8 718 aa13.23□□□□□ -0.29
HDAC6-219ENST00000476625 CCDC113Q9H0I3 377 aa13.23□□□□□ -0.29
HDAC6-219ENST00000476625 FZD8Q9H461 694 aa13.23□□□□□ -0.29
HDAC6-219ENST00000476625 SMG5Q9UPR3 1016 aaKnown RBP13.23□□□□□ -0.29
HDAC6-219ENST00000476625 EP300Q09472 2414 aaPredicted RBP13.23□□□□□ -0.29
HDAC6-219ENST00000476625 ANK1P16157 1881 aa13.23□□□□□ -0.29
HDAC6-219ENST00000476625 JAK2O60674 1132 aa13.22□□□□□ -0.29
HDAC6-219ENST00000476625 PFKFB2O60825 505 aa13.22□□□□□ -0.29
HDAC6-219ENST00000476625 REC8O95072 547 aa13.22□□□□□ -0.29
HDAC6-219ENST00000476625 PRKCBP05771 671 aa13.22□□□□□ -0.29
HDAC6-219ENST00000476625 RHOP08100 348 aa13.22□□□□□ -0.29
HDAC6-219ENST00000476625 HNRNPA1P09651 372 aaKnown RBP eCLIP13.22□□□□□ -0.29
HDAC6-219ENST00000476625 GJA1P17302 382 aa13.22□□□□□ -0.29
HDAC6-219ENST00000476625 FGFR3P22607 806 aa13.22□□□□□ -0.29
HDAC6-219ENST00000476625 TGM1P22735 817 aa13.22□□□□□ -0.29
HDAC6-219ENST00000476625 CCR2P41597 374 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms