RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 GOLGA2P5Q9HBQ8 144 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 FNIP2Q9P278 1114 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 HCN4Q9Y3Q4 1203 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 ADAM12O43184 909 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 TGM5O43548 720 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 TADA2AO75478 443 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 BRD1O95696 1058 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 MAPTP10636 758 aaKnown RBP15.49■□□□□ 0.07
UPF3A-204ENST00000475218 PLS3P13797 630 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 PTPAQ15257 358 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 FAM173BQ6P4H8 233 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 USP49Q70CQ1 688 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 BRAPQ7Z569 592 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 BMP8AQ7Z5Y6 402 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 PALB2Q86YC2 1186 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 KCTD17Q8N5Z5 321 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 CMASQ8NFW8 434 aaPredicted RBP15.49■□□□□ 0.07
UPF3A-204ENST00000475218 LNX1Q8TBB1 728 aaPredicted RBP15.49■□□□□ 0.07
UPF3A-204ENST00000475218 CLSTN3Q9BQT9 956 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 TIPINQ9BVW5 301 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 MRPL4Q9BYD3 311 aaKnown RBP15.49■□□□□ 0.07
UPF3A-204ENST00000475218 NT5C3AQ9H0P0 336 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 SSX2IPQ9Y2D8 614 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 NR2E1Q9Y466 385 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 RBM19Q9Y4C8 960 aaKnown RBP15.49■□□□□ 0.07
UPF3A-204ENST00000475218 CLIC4Q9Y696 253 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 PDCD11Q14690 1871 aaKnown RBP15.48■□□□□ 0.07
UPF3A-204ENST00000475218 KMT2EQ8IZD2 1858 aa15.48■□□□□ 0.07
UPF3A-204ENST00000475218 SF3B1O75533 1304 aaKnown RBP eCLIP15.48■□□□□ 0.07
UPF3A-204ENST00000475218 SMIM28A0A1B0GU29 152 aa15.48■□□□□ 0.07
UPF3A-204ENST00000475218 GLUD1P00367 558 aa15.48■□□□□ 0.07
UPF3A-204ENST00000475218 ASGR2P07307 311 aa15.48■□□□□ 0.07
UPF3A-204ENST00000475218 CLCNKBP51801 687 aa15.48■□□□□ 0.07
UPF3A-204ENST00000475218 OSTNP61366 133 aa15.48■□□□□ 0.07
UPF3A-204ENST00000475218 RESTQ13127 1097 aa15.48■□□□□ 0.07
UPF3A-204ENST00000475218 ZNF568Q3ZCX4 644 aa15.48■□□□□ 0.07
UPF3A-204ENST00000475218 C15orf39Q6ZRI6 1047 aa15.48■□□□□ 0.07
UPF3A-204ENST00000475218 ZBTB33Q86T24 672 aa15.48■□□□□ 0.07
UPF3A-204ENST00000475218 GLYCTKQ8IVS8 523 aa15.48■□□□□ 0.07
UPF3A-204ENST00000475218 ZDHHC14Q8IZN3 488 aa15.48■□□□□ 0.07
UPF3A-204ENST00000475218 TMEM130Q8N3G9 435 aa15.48■□□□□ 0.07
UPF3A-204ENST00000475218 AK8Q96MA6 479 aa15.48■□□□□ 0.07
UPF3A-204ENST00000475218 CITO14578 2027 aa15.48■□□□□ 0.07
UPF3A-204ENST00000475218 DOCK6Q96HP0 2047 aa15.48■□□□□ 0.07
UPF3A-204ENST00000475218 CCDC195A0A1B0GUA6 201 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 VPS37CA5D8V6 355 aaPredicted RBP15.47■□□□□ 0.07
UPF3A-204ENST00000475218 TMEM189-UBE2V1I3L0A0 370 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 KARSQ15046 597 aaKnown RBP15.47■□□□□ 0.07
UPF3A-204ENST00000475218 UPP1Q16831 310 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 FAM171A1Q5VUB5 890 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 KREMEN2Q8NCW0 462 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 PIK3R5Q8WYR1 880 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 SNX27Q96L92 541 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 REEP2Q9BRK0 252 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 USTQ9Y2C2 406 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 DOCK8Q8NF50 2099 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 ZDBF2Q9HCK1 2354 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 MCF2P10911 925 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 PLCG1P19174 1290 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 SYT1P21579 422 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 NCKAP1LP55160 1127 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 SIGLEC14Q08ET2 396 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 SEZ6Q53EL9 994 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 MPZL3Q6UWV2 235 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 RSPO2Q6UXX9 243 aaPredicted RBP15.47■□□□□ 0.07
UPF3A-204ENST00000475218 TDRD5Q8NAT2 981 aaKnown RBP15.47■□□□□ 0.07
UPF3A-204ENST00000475218 KCNN1Q92952 543 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 FIZ1Q96SL8 496 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 TTPALQ9BTX7 342 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 RHOBTB2Q9BYZ6 727 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.47■□□□□ 0.07
UPF3A-204ENST00000475218 KCND2Q9NZV8 630 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 LIMD1Q9UGP4 676 aa15.47■□□□□ 0.07
UPF3A-204ENST00000475218 SLC26A4O43511 780 aa15.46■□□□□ 0.07
UPF3A-204ENST00000475218 C1RP00736 705 aa15.46■□□□□ 0.07
UPF3A-204ENST00000475218 PDGFBP01127 241 aaPredicted RBP15.46■□□□□ 0.07
UPF3A-204ENST00000475218 FGFR3P22607 806 aa15.46■□□□□ 0.07
UPF3A-204ENST00000475218 ZNF131P52739 623 aa15.46■□□□□ 0.07
UPF3A-204ENST00000475218 MCM6Q14566 821 aa15.46■□□□□ 0.07
UPF3A-204ENST00000475218 C18orf25Q96B23 403 aaPredicted RBP15.46■□□□□ 0.07
UPF3A-204ENST00000475218 FBXO2Q9UK22 296 aaPredicted RBP15.46■□□□□ 0.07
UPF3A-204ENST00000475218 I3L4J1 428 aa15.45■□□□□ 0.06
UPF3A-204ENST00000475218 TOM1L1O75674 476 aa15.45■□□□□ 0.06
UPF3A-204ENST00000475218 KCNE1P15382 129 aa15.45■□□□□ 0.06
UPF3A-204ENST00000475218 LONP1P36776 959 aaKnown RBP15.45■□□□□ 0.06
UPF3A-204ENST00000475218 UBA7P41226 1012 aa15.45■□□□□ 0.06
UPF3A-204ENST00000475218 SLC10A6Q3KNW5 377 aa15.45■□□□□ 0.06
UPF3A-204ENST00000475218 SPECC1Q5M775 1068 aa15.45■□□□□ 0.06
UPF3A-204ENST00000475218 IER5LQ5T953 404 aa15.45■□□□□ 0.06
UPF3A-204ENST00000475218 GPBP1Q86WP2 473 aa15.45■□□□□ 0.06
UPF3A-204ENST00000475218 CEP57Q86XR8 500 aa15.45■□□□□ 0.06
UPF3A-204ENST00000475218 HDAC7Q8WUI4 952 aa15.45■□□□□ 0.06
UPF3A-204ENST00000475218 PBXIP1Q96AQ6 731 aa15.45■□□□□ 0.06
UPF3A-204ENST00000475218 EPSTI1Q96J88 318 aa15.45■□□□□ 0.06
UPF3A-204ENST00000475218 CDK5RAP3Q96JB5 506 aa15.45■□□□□ 0.06
UPF3A-204ENST00000475218 CCDC94Q9BW85 323 aaPredicted RBP15.45■□□□□ 0.06
UPF3A-204ENST00000475218 CNTN3Q9P232 1028 aa15.45■□□□□ 0.06
UPF3A-204ENST00000475218 DAXXQ9UER7 740 aaPredicted RBP15.45■□□□□ 0.06
UPF3A-204ENST00000475218 SORCS3Q9UPU3 1222 aa15.45■□□□□ 0.06
UPF3A-204ENST00000475218 MTMR6Q9Y217 621 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms