RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 GLRA4Q5JXX5 417 aa20.4■□□□□ 0.86
COL7A1-209ENST00000474432 SPATA31D4Q6ZUB0 917 aa20.4■□□□□ 0.86
COL7A1-209ENST00000474432 PALB2Q86YC2 1186 aa20.4■□□□□ 0.86
COL7A1-209ENST00000474432 SPIRE2Q8WWL2 714 aa20.4■□□□□ 0.86
COL7A1-209ENST00000474432 ZNF707Q96C28 371 aaPredicted RBP20.4■□□□□ 0.86
COL7A1-209ENST00000474432 DOCK6Q96HP0 2047 aa20.4■□□□□ 0.86
COL7A1-209ENST00000474432 TIPINQ9BVW5 301 aa20.4■□□□□ 0.86
COL7A1-209ENST00000474432 RHOBTB2Q9BYZ6 727 aa20.4■□□□□ 0.86
COL7A1-209ENST00000474432 NT5C3AQ9H0P0 336 aa20.4■□□□□ 0.86
COL7A1-209ENST00000474432 SMOC2Q9H3U7 446 aa20.4■□□□□ 0.86
COL7A1-209ENST00000474432 DAXXQ9UER7 740 aaPredicted RBP20.4■□□□□ 0.86
COL7A1-209ENST00000474432 RBM19Q9Y4C8 960 aaKnown RBP20.4■□□□□ 0.86
COL7A1-209ENST00000474432 DOCK8Q8NF50 2099 aa20.39■□□□□ 0.86
COL7A1-209ENST00000474432 CITO14578 2027 aa20.39■□□□□ 0.86
COL7A1-209ENST00000474432 SF3B1O75533 1304 aaKnown RBP eCLIP20.39■□□□□ 0.85
COL7A1-209ENST00000474432 TGM5O43548 720 aa20.39■□□□□ 0.85
COL7A1-209ENST00000474432 PLS3P13797 630 aa20.39■□□□□ 0.85
COL7A1-209ENST00000474432 SOX4Q06945 474 aaPredicted RBP20.39■□□□□ 0.85
COL7A1-209ENST00000474432 KREMEN2Q8NCW0 462 aa20.39■□□□□ 0.85
COL7A1-209ENST00000474432 TMEM161BQ8NDZ6 487 aa20.39■□□□□ 0.85
COL7A1-209ENST00000474432 LNX1Q8TBB1 728 aaPredicted RBP20.39■□□□□ 0.85
COL7A1-209ENST00000474432 HDAC7Q8WUI4 952 aa20.39■□□□□ 0.85
COL7A1-209ENST00000474432 PIK3R5Q8WYR1 880 aa20.39■□□□□ 0.85
COL7A1-209ENST00000474432 ZBTB45Q96K62 511 aaPredicted RBP20.39■□□□□ 0.85
COL7A1-209ENST00000474432 AK8Q96MA6 479 aa20.39■□□□□ 0.85
COL7A1-209ENST00000474432 CLSTN3Q9BQT9 956 aa20.39■□□□□ 0.85
COL7A1-209ENST00000474432 MRPL4Q9BYD3 311 aaKnown RBP20.39■□□□□ 0.85
COL7A1-209ENST00000474432 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.39■□□□□ 0.85
COL7A1-209ENST00000474432 BLOC1S4Q9NUP1 217 aa20.39■□□□□ 0.85
COL7A1-209ENST00000474432 PDCD11Q14690 1871 aaKnown RBP20.39■□□□□ 0.85
COL7A1-209ENST00000474432 SMIM28A0A1B0GU29 152 aa20.38■□□□□ 0.85
COL7A1-209ENST00000474432 CCDC195A0A1B0GUA6 201 aa20.38■□□□□ 0.85
COL7A1-209ENST00000474432 TMEM189-UBE2V1I3L0A0 370 aa20.38■□□□□ 0.85
COL7A1-209ENST00000474432 N4BP1O75113 896 aaKnown RBP20.38■□□□□ 0.85
COL7A1-209ENST00000474432 ASGR2P07307 311 aa20.38■□□□□ 0.85
COL7A1-209ENST00000474432 MAPTP10636 758 aaKnown RBP20.38■□□□□ 0.85
COL7A1-209ENST00000474432 CACNB1Q02641 598 aaPredicted RBP20.38■□□□□ 0.85
COL7A1-209ENST00000474432 ZNF568Q3ZCX4 644 aa20.38■□□□□ 0.85
COL7A1-209ENST00000474432 FAM171A1Q5VUB5 890 aa20.38■□□□□ 0.85
COL7A1-209ENST00000474432 BRAPQ7Z569 592 aa20.38■□□□□ 0.85
COL7A1-209ENST00000474432 GLYCTKQ8IVS8 523 aa20.38■□□□□ 0.85
COL7A1-209ENST00000474432 TDRD5Q8NAT2 981 aaKnown RBP20.38■□□□□ 0.85
COL7A1-209ENST00000474432 C3orf58Q8NDZ4 430 aa20.38■□□□□ 0.85
COL7A1-209ENST00000474432 PBXIP1Q96AQ6 731 aa20.38■□□□□ 0.85
COL7A1-209ENST00000474432 MFSD14AQ96MC6 490 aa20.38■□□□□ 0.85
COL7A1-209ENST00000474432 ZMAT2Q96NC0 199 aaKnown RBP20.38■□□□□ 0.85
COL7A1-209ENST00000474432 BACH2Q9BYV9 841 aa20.38■□□□□ 0.85
COL7A1-209ENST00000474432 GOLGA2P5Q9HBQ8 144 aa20.38■□□□□ 0.85
COL7A1-209ENST00000474432 LIMD1Q9UGP4 676 aa20.38■□□□□ 0.85
COL7A1-209ENST00000474432 WDFY4Q6ZS81 3184 aa20.38■□□□□ 0.85
COL7A1-209ENST00000474432 ADAM12O43184 909 aa20.37■□□□□ 0.85
COL7A1-209ENST00000474432 SLC26A4O43511 780 aa20.37■□□□□ 0.85
COL7A1-209ENST00000474432 MCF2P10911 925 aa20.37■□□□□ 0.85
COL7A1-209ENST00000474432 CLCNKBP51801 687 aa20.37■□□□□ 0.85
COL7A1-209ENST00000474432 OSTNP61366 133 aa20.37■□□□□ 0.85
COL7A1-209ENST00000474432 SF3A1Q15459 793 aaKnown RBP20.37■□□□□ 0.85
COL7A1-209ENST00000474432 UPP1Q16831 310 aa20.37■□□□□ 0.85
COL7A1-209ENST00000474432 ZBTB33Q86T24 672 aa20.37■□□□□ 0.85
COL7A1-209ENST00000474432 KCNN1Q92952 543 aa20.37■□□□□ 0.85
COL7A1-209ENST00000474432 TTPALQ9BTX7 342 aa20.37■□□□□ 0.85
COL7A1-209ENST00000474432 HAPLN2Q9GZV7 340 aa20.37■□□□□ 0.85
COL7A1-209ENST00000474432 KCND2Q9NZV8 630 aa20.37■□□□□ 0.85
COL7A1-209ENST00000474432 SORCS3Q9UPU3 1222 aa20.37■□□□□ 0.85
COL7A1-209ENST00000474432 PDGFBP01127 241 aaPredicted RBP20.36■□□□□ 0.85
COL7A1-209ENST00000474432 FGFR3P22607 806 aa20.36■□□□□ 0.85
COL7A1-209ENST00000474432 PTPAQ15257 358 aa20.36■□□□□ 0.85
COL7A1-209ENST00000474432 IER5LQ5T953 404 aa20.36■□□□□ 0.85
COL7A1-209ENST00000474432 DCLRE1AQ6PJP8 1040 aa20.36■□□□□ 0.85
COL7A1-209ENST00000474432 MPZL3Q6UWV2 235 aa20.36■□□□□ 0.85
COL7A1-209ENST00000474432 CCDC149Q6ZUS6 474 aa20.36■□□□□ 0.85
COL7A1-209ENST00000474432 SNX27Q96L92 541 aa20.36■□□□□ 0.85
COL7A1-209ENST00000474432 CCDC94Q9BW85 323 aaPredicted RBP20.36■□□□□ 0.85
COL7A1-209ENST00000474432 PLEKHA4Q9H4M7 779 aa20.36■□□□□ 0.85
COL7A1-209ENST00000474432 WDR6Q9NNW5 1121 aaKnown RBP20.36■□□□□ 0.85
COL7A1-209ENST00000474432 KCNE1P15382 129 aa20.35■□□□□ 0.85
COL7A1-209ENST00000474432 NCKAP1LP55160 1127 aa20.35■□□□□ 0.85
COL7A1-209ENST00000474432 RSPO2Q6UXX9 243 aaPredicted RBP20.35■□□□□ 0.85
COL7A1-209ENST00000474432 CYP26C1Q6V0L0 522 aa20.35■□□□□ 0.85
COL7A1-209ENST00000474432 USP49Q70CQ1 688 aa20.35■□□□□ 0.85
COL7A1-209ENST00000474432 APBB1IPQ7Z5R6 666 aaPredicted RBP20.35■□□□□ 0.85
COL7A1-209ENST00000474432 CEP57Q86XR8 500 aa20.35■□□□□ 0.85
COL7A1-209ENST00000474432 PLCD3Q8N3E9 789 aa20.35■□□□□ 0.85
COL7A1-209ENST00000474432 FBXL6Q8N531 539 aa20.35■□□□□ 0.85
COL7A1-209ENST00000474432 CDK5RAP3Q96JB5 506 aa20.35■□□□□ 0.85
COL7A1-209ENST00000474432 REEP2Q9BRK0 252 aa20.35■□□□□ 0.85
COL7A1-209ENST00000474432 FBXW11Q9UKB1 542 aa20.35■□□□□ 0.85
COL7A1-209ENST00000474432 CLIC4Q9Y696 253 aa20.35■□□□□ 0.85
COL7A1-209ENST00000474432 VPS37CA5D8V6 355 aaPredicted RBP20.34■□□□□ 0.85
COL7A1-209ENST00000474432 SPDYE4A6NLX3 237 aa20.34■□□□□ 0.85
COL7A1-209ENST00000474432 TOM1L1O75674 476 aa20.34■□□□□ 0.85
COL7A1-209ENST00000474432 ZMYND10O75800 440 aa20.34■□□□□ 0.85
COL7A1-209ENST00000474432 B3GAT3O94766 335 aa20.34■□□□□ 0.85
COL7A1-209ENST00000474432 BMP15O95972 392 aa20.34■□□□□ 0.85
COL7A1-209ENST00000474432 PLCG1P19174 1290 aa20.34■□□□□ 0.85
COL7A1-209ENST00000474432 HOXD11P31277 338 aaPredicted RBP20.34■□□□□ 0.85
COL7A1-209ENST00000474432 LONP1P36776 959 aaKnown RBP20.34■□□□□ 0.85
COL7A1-209ENST00000474432 UBA7P41226 1012 aa20.34■□□□□ 0.85
COL7A1-209ENST00000474432 CREMQ03060 361 aa20.34■□□□□ 0.85
COL7A1-209ENST00000474432 RESTQ13127 1097 aa20.34■□□□□ 0.85
COL7A1-209ENST00000474432 MTMR3Q13615 1198 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms