RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 MKNK1Q9BUB5 465 aa11.95□□□□□ -0.5
SCN9A-205ENST00000454569 SEZ6LQ9BYH1 1024 aa11.95□□□□□ -0.5
SCN9A-205ENST00000454569 NXF3Q9H4D5 531 aaKnown RBP11.95□□□□□ -0.5
SCN9A-205ENST00000454569 MMRN2Q9H8L6 949 aa11.95□□□□□ -0.5
SCN9A-205ENST00000454569 MAGEC2Q9UBF1 373 aaPredicted RBP11.95□□□□□ -0.5
SCN9A-205ENST00000454569 FRMD4BQ9Y2L6 1034 aa11.95□□□□□ -0.5
SCN9A-205ENST00000454569 TTC3P53804 2025 aa11.94□□□□□ -0.5
SCN9A-205ENST00000454569 MROH7Q68CQ1 1323 aa11.94□□□□□ -0.5
SCN9A-205ENST00000454569 N4BP3O15049 544 aa11.94□□□□□ -0.5
SCN9A-205ENST00000454569 TLR3O15455 904 aaKnown RBP11.94□□□□□ -0.5
SCN9A-205ENST00000454569 FGFR1OPO95684 399 aaKnown RBP11.94□□□□□ -0.5
SCN9A-205ENST00000454569 CXCL8P10145 99 aa11.94□□□□□ -0.5
SCN9A-205ENST00000454569 MCF2P10911 925 aa11.94□□□□□ -0.5
SCN9A-205ENST00000454569 PBX1P40424 430 aa11.94□□□□□ -0.5
SCN9A-205ENST00000454569 VAMP7P51809 220 aa11.94□□□□□ -0.5
SCN9A-205ENST00000454569 KCNMA1Q12791 1236 aa11.94□□□□□ -0.5
SCN9A-205ENST00000454569 BFSP1Q12934 665 aa11.94□□□□□ -0.5
SCN9A-205ENST00000454569 MAN2A1Q16706 1144 aa11.94□□□□□ -0.5
SCN9A-205ENST00000454569 SLC10A6Q3KNW5 377 aa11.94□□□□□ -0.5
SCN9A-205ENST00000454569 CBWD6Q4V339 395 aa11.94□□□□□ -0.5
SCN9A-205ENST00000454569 VWA3BQ502W6 1294 aa11.94□□□□□ -0.5
SCN9A-205ENST00000454569 DCAF17Q5H9S7 520 aaPredicted RBP11.94□□□□□ -0.5
SCN9A-205ENST00000454569 CBWD3Q5JTY5 395 aa11.94□□□□□ -0.5
SCN9A-205ENST00000454569 CBWD5Q5RIA9 395 aa11.94□□□□□ -0.5
SCN9A-205ENST00000454569 SLC27A1Q6PCB7 646 aa11.94□□□□□ -0.5
SCN9A-205ENST00000454569 FAM114A1Q8IWE2 563 aa11.94□□□□□ -0.5
SCN9A-205ENST00000454569 CAGE1Q8TC20 777 aa11.94□□□□□ -0.5
SCN9A-205ENST00000454569 NDST4Q9H3R1 872 aa11.94□□□□□ -0.5
SCN9A-205ENST00000454569 HIPK3Q9H422 1215 aa11.94□□□□□ -0.5
SCN9A-205ENST00000454569 SNTG2Q9NY99 539 aa11.94□□□□□ -0.5
SCN9A-205ENST00000454569 LAMA2P24043 3122 aaKnown RBP11.94□□□□□ -0.5
SCN9A-205ENST00000454569 ZNF233A6NK53 670 aa11.93□□□□□ -0.5
SCN9A-205ENST00000454569 LGALS16A8MUM7 142 aa11.93□□□□□ -0.5
SCN9A-205ENST00000454569 LACTBL1A8MY62 500 aa11.93□□□□□ -0.5
SCN9A-205ENST00000454569 RNF225M0QZC1 329 aaPredicted RBP11.93□□□□□ -0.5
SCN9A-205ENST00000454569 CAND2O75155 1236 aa11.93□□□□□ -0.5
SCN9A-205ENST00000454569 GNA14O95837 355 aa11.93□□□□□ -0.5
SCN9A-205ENST00000454569 CLTBP09497 229 aa11.93□□□□□ -0.5
SCN9A-205ENST00000454569 AKAP5P24588 427 aa11.93□□□□□ -0.5
SCN9A-205ENST00000454569 AFF1P51825 1210 aaKnown RBP11.93□□□□□ -0.5
SCN9A-205ENST00000454569 CCDC173Q0VFZ6 552 aa11.93□□□□□ -0.5
SCN9A-205ENST00000454569 PAK2Q13177 524 aa11.93□□□□□ -0.5
SCN9A-205ENST00000454569 BFSP2Q13515 415 aa11.93□□□□□ -0.5
SCN9A-205ENST00000454569 TCERG1LQ5VWI1 586 aa11.93□□□□□ -0.5
SCN9A-205ENST00000454569 DPY19L2P1Q6NXN4 242 aa11.93□□□□□ -0.5
SCN9A-205ENST00000454569 NOTUMQ6P988 496 aa11.93□□□□□ -0.5
SCN9A-205ENST00000454569 BRSK2Q8IWQ3 736 aa11.93□□□□□ -0.5
SCN9A-205ENST00000454569 ZNF710Q8N1W2 664 aa11.93□□□□□ -0.5
SCN9A-205ENST00000454569 OR5B17Q8NGF7 314 aa11.93□□□□□ -0.5
SCN9A-205ENST00000454569 CRACR2AQ9BSW2 395 aa11.93□□□□□ -0.5
SCN9A-205ENST00000454569 APOL6Q9BWW8 343 aa11.93□□□□□ -0.5
SCN9A-205ENST00000454569 TMEM39AQ9NV64 488 aa11.93□□□□□ -0.5
SCN9A-205ENST00000454569 RBAKQ9NYW8 714 aaPredicted RBP11.93□□□□□ -0.5
SCN9A-205ENST00000454569 IPPQ9Y573 584 aa11.93□□□□□ -0.5
SCN9A-205ENST00000454569 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.93□□□□□ -0.5
SCN9A-205ENST00000454569 LTBP2Q14767 1821 aa11.93□□□□□ -0.5
SCN9A-205ENST00000454569 PES1O00541 588 aaKnown RBP11.92□□□□□ -0.5
SCN9A-205ENST00000454569 EPHB6O15197 1021 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 GPR182O15218 404 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 MAPK13O15264 365 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 SLC34A2O95436 690 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 LDHAP00338 332 aaKnown RBP11.92□□□□□ -0.5
SCN9A-205ENST00000454569 RPLP2P05387 115 aaKnown RBP11.92□□□□□ -0.5
SCN9A-205ENST00000454569 DLATP10515 647 aaKnown RBP11.92□□□□□ -0.5
SCN9A-205ENST00000454569 ATF7P17544 494 aaPredicted RBP11.92□□□□□ -0.5
SCN9A-205ENST00000454569 AXLP30530 894 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 GCLMP48507 274 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 UBXN1Q04323 297 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 GOLGA8FQ08AF8 430 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 GOLGA8DPQ0D2H9 430 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 PSMD6Q15008 389 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 TWF2Q6IBS0 349 aaKnown RBP11.92□□□□□ -0.5
SCN9A-205ENST00000454569 EFCAB13Q8IY85 973 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 SPC24Q8NBT2 197 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 DBF4BQ8NFT6 615 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 LPPQ93052 612 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 ABHD8Q96I13 439 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 ADAM2Q99965 735 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 TMEM117Q9H0C3 514 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 METTL14Q9HCE5 456 aaKnown RBP11.92□□□□□ -0.5
SCN9A-205ENST00000454569 KLK14Q9P0G3 267 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 FNDC1Q4ZHG4 1894 aaPredicted RBP11.92□□□□□ -0.5
SCN9A-205ENST00000454569 SLC9A1P19634 815 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 IBSPP21815 317 aaPredicted RBP11.92□□□□□ -0.5
SCN9A-205ENST00000454569 FECHP22830 423 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 GRM5P41594 1212 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 PCBP1Q15365 356 aaKnown RBP eCLIP11.92□□□□□ -0.5
SCN9A-205ENST00000454569 PLEKHG4Q58EX7 1191 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 INTS8Q75QN2 995 aaKnown RBP11.92□□□□□ -0.5
SCN9A-205ENST00000454569 DEFB128Q7Z7B8 93 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 VSTM4Q8IW00 320 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 SEMA4DQ92854 862 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 MRFAP1L1Q96HT8 127 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 PDLIM2Q96JY6 352 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 ZMAT2Q96NC0 199 aaKnown RBP11.92□□□□□ -0.5
SCN9A-205ENST00000454569 IFIH1Q9BYX4 1025 aaKnown RBP11.92□□□□□ -0.5
SCN9A-205ENST00000454569 PRDM5Q9NQX1 630 aaPredicted RBP11.92□□□□□ -0.5
SCN9A-205ENST00000454569 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.92□□□□□ -0.5
SCN9A-205ENST00000454569 SIK3Q9Y2K2 1263 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 PCDHB2Q9Y5E7 798 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms