RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 TMEM87AQ8NBN3 555 aa13.95□□□□□ -0.18
PRPF40A-203ENST00000448428 SLC22A17Q8WUG5 538 aa13.95□□□□□ -0.18
PRPF40A-203ENST00000448428 DNAJC19Q96DA6 116 aa13.95□□□□□ -0.18
PRPF40A-203ENST00000448428 B3GALT6Q96L58 329 aa13.95□□□□□ -0.18
PRPF40A-203ENST00000448428 KLHL5Q96PQ7 755 aa13.95□□□□□ -0.18
PRPF40A-203ENST00000448428 PPP1R10Q96QC0 940 aaKnown RBP13.95□□□□□ -0.18
PRPF40A-203ENST00000448428 HERC2P3Q9BVR0 1158 aa13.95□□□□□ -0.18
PRPF40A-203ENST00000448428 S1PR5Q9H228 398 aa13.95□□□□□ -0.18
PRPF40A-203ENST00000448428 MRPL17Q9NRX2 175 aaKnown RBP13.95□□□□□ -0.18
PRPF40A-203ENST00000448428 CHST7Q9NS84 486 aa13.95□□□□□ -0.18
PRPF40A-203ENST00000448428 ANKFY1Q9P2R3 1169 aa13.95□□□□□ -0.18
PRPF40A-203ENST00000448428 ADAM28Q9UKQ2 775 aa13.95□□□□□ -0.18
PRPF40A-203ENST00000448428 ZDHHC9Q9Y397 364 aa13.95□□□□□ -0.18
PRPF40A-203ENST00000448428 PDCD11Q14690 1871 aaKnown RBP13.95□□□□□ -0.18
PRPF40A-203ENST00000448428 TCHHQ07283 1943 aa13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 K7ENM7 598 aa13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 MEFVO15553 781 aaPredicted RBP13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 URODP06132 367 aa13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 SRGAP2BP0DMP2 458 aa13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 EPCAMP16422 314 aa13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 SCP2P22307 547 aa13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 IGFBP6P24592 240 aaPredicted RBP13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 GTF2BQ00403 316 aa13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 DSG1Q02413 1049 aa13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 DNM1Q05193 864 aaKnown RBP13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 MCL1Q07820 350 aa13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 NOLC1Q14978 699 aaKnown RBP eCLIP13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 ZC2HC1CQ53FD0 456 aaPredicted RBP13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 SFR1Q86XK3 245 aa13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 CASP10Q92851 521 aa13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 BICD1Q96G01 975 aa13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 ZMAT2Q96NC0 199 aaKnown RBP13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 APOL5Q9BWW9 433 aa13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 TOPORSQ9NS56 1045 aaPredicted RBP13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 PRKAG3Q9UGI9 489 aa13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 RCOR1Q9UKL0 485 aa13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 PCDHA7Q9UN72 937 aa13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 USP15Q9Y4E8 981 aaPredicted RBP13.94□□□□□ -0.18
PRPF40A-203ENST00000448428 PLXNA3P51805 1871 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 KIF4AO95239 1232 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 PIGRP01833 764 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 HOXB8P17481 243 aaPredicted RBP13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 KLRC2P26717 231 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 MATR3P43243 847 aaKnown RBP eCLIP13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 GLUD2P49448 558 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 LIG4P49917 911 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 ZP2Q05996 745 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 E2F4Q16254 413 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 SLC10A6Q3KNW5 377 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 USP41Q3LFD5 358 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 KIAA1841Q6NSI8 718 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 ZNF720Q7Z2F6 126 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 ADHFE1Q8IWW8 467 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 GJD3Q8N144 294 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 KCNG4Q8TDN1 519 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 HASPINQ8TF76 798 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 SUSD6Q92537 303 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 STAMQ92783 540 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 SNX27Q96L92 541 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 EMILIN2Q9BXX0 1053 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 ST6GALNAC4Q9H4F1 302 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 RXFP1Q9HBX9 757 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 CFAP45Q9UL16 551 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 SSX2IPQ9Y2D8 614 aa13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 MTCL1Q9Y4B5 1905 aaKnown RBP13.93□□□□□ -0.18
PRPF40A-203ENST00000448428 VWA8A3KMH1 1905 aa13.92□□□□□ -0.18
PRPF40A-203ENST00000448428 C19orf67A6NJJ6 358 aa13.92□□□□□ -0.18
PRPF40A-203ENST00000448428 HNRNPDLO14979 420 aaKnown RBP13.92□□□□□ -0.18
PRPF40A-203ENST00000448428 KCNE1P15382 129 aa13.92□□□□□ -0.18
PRPF40A-203ENST00000448428 GAP43P17677 238 aa13.92□□□□□ -0.18
PRPF40A-203ENST00000448428 SSTR3P32745 418 aaPredicted RBP13.92□□□□□ -0.18
PRPF40A-203ENST00000448428 ME1P48163 572 aa13.92□□□□□ -0.18
PRPF40A-203ENST00000448428 CLCN4P51793 760 aa13.92□□□□□ -0.18
PRPF40A-203ENST00000448428 CLCNKBP51801 687 aa13.92□□□□□ -0.18
PRPF40A-203ENST00000448428 SOX4Q06945 474 aaPredicted RBP13.92□□□□□ -0.18
PRPF40A-203ENST00000448428 UPP1Q16831 310 aa13.92□□□□□ -0.18
PRPF40A-203ENST00000448428 KANK3Q6NY19 840 aa13.92□□□□□ -0.18
PRPF40A-203ENST00000448428 SLC39A4Q6P5W5 647 aa13.92□□□□□ -0.18
PRPF40A-203ENST00000448428 DCLRE1AQ6PJP8 1040 aa13.92□□□□□ -0.18
PRPF40A-203ENST00000448428 CD300LGQ6UXG3 332 aa13.92□□□□□ -0.18
PRPF40A-203ENST00000448428 PPFIBP1Q86W92 1011 aa13.92□□□□□ -0.18
PRPF40A-203ENST00000448428 C12orf76Q8N812 135 aaPredicted RBP13.92□□□□□ -0.18
PRPF40A-203ENST00000448428 KHSRPQ92945 711 aaKnown RBP eCLIP13.92□□□□□ -0.182e-7■■■□□ 15.9
PRPF40A-203ENST00000448428 CHAMP1Q96JM3 812 aa13.92□□□□□ -0.18
PRPF40A-203ENST00000448428 STRA6Q9BX79 667 aa13.92□□□□□ -0.18
PRPF40A-203ENST00000448428 GOLGA2P5Q9HBQ8 144 aa13.92□□□□□ -0.18
PRPF40A-203ENST00000448428 TBC1D7Q9P0N9 293 aa13.92□□□□□ -0.18
PRPF40A-203ENST00000448428 CNTN3Q9P232 1028 aa13.92□□□□□ -0.18
PRPF40A-203ENST00000448428 ANKRD63C9JTQ0 380 aa13.91□□□□□ -0.18
PRPF40A-203ENST00000448428 TEX28O15482 410 aa13.91□□□□□ -0.18
PRPF40A-203ENST00000448428 B3GAT3O94766 335 aa13.91□□□□□ -0.18
PRPF40A-203ENST00000448428 CLTAP09496 248 aa13.91□□□□□ -0.18
PRPF40A-203ENST00000448428 IDEP14735 1019 aa13.91□□□□□ -0.18
PRPF40A-203ENST00000448428 ABCD1P33897 745 aa13.91□□□□□ -0.18
PRPF40A-203ENST00000448428 TNFSF9P41273 254 aa13.91□□□□□ -0.18
PRPF40A-203ENST00000448428 TPRNQ4KMQ1 711 aa13.91□□□□□ -0.18
PRPF40A-203ENST00000448428 FAM171A1Q5VUB5 890 aa13.91□□□□□ -0.18
PRPF40A-203ENST00000448428 PRSS55Q6UWB4 352 aaPredicted RBP13.91□□□□□ -0.18
PRPF40A-203ENST00000448428 MAP4K3Q8IVH8 894 aa13.91□□□□□ -0.18
PRPF40A-203ENST00000448428 GPR65Q8IYL9 337 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms