RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 PIK3R2O00459 728 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 ZBTB39O15060 712 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 GPR182O15218 404 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 KRT7P08729 469 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 GRIK4Q16099 956 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 SV2CQ496J9 727 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 CYP4F22Q6NT55 531 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 NFRKBQ6P4R8 1299 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 GJB7Q6PEY0 223 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 SPATA2LQ8IUW3 424 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-213ENST00000448038 NT5C1AQ9BXI3 368 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 KCNMB3Q9NPA1 279 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 PCDHB2Q9Y5E7 798 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 A0A1W2PQJ5 194 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 NDUFAB1O14561 156 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 PPFIA4O75335 1185 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 USP2O75604 605 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-213ENST00000448038 GALCP54803 685 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 ATP11AP98196 1134 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 TAP1Q03518 808 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 NME3Q13232 169 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 GLRA4Q5JXX5 417 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 WNK4Q96J92 1243 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 OSBPL9Q96SU4 736 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 BLOC1S4Q9NUP1 217 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 DONSONQ9NYP3 566 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 MAGED2Q9UNF1 606 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-213ENST00000448038 HEY1Q9Y5J3 304 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 DOT1LQ8TEK3 1739 aa7.88□□□□□ -1.15
SYNE1-213ENST00000448038 TRPM3Q9HCF6 1732 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-213ENST00000448038 CPP00450 1065 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 SNHG28P0DPA3 235 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 UBA1P22314 1058 aaKnown RBP7.87□□□□□ -1.15
SYNE1-213ENST00000448038 CYP2C19P33261 490 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 GRIK1P39086 918 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 RGS7P49802 495 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 MRPS25P82663 173 aaKnown RBP7.87□□□□□ -1.15
SYNE1-213ENST00000448038 CCZ1BP86790 482 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 CCZ1P86791 482 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-213ENST00000448038 IQSEC1Q6DN90 963 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 RHOT1Q8IXI2 618 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 KIAA0895Q8NCT3 520 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 HAS1Q92839 578 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 MTIF3Q9H2K0 278 aaKnown RBP7.87□□□□□ -1.15
SYNE1-213ENST00000448038 STARD7Q9NQZ5 370 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 IPO11Q9UI26 975 aaKnown RBP7.87□□□□□ -1.15
SYNE1-213ENST00000448038 KDM3BQ7LBC6 1761 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 CREB3O43889 395 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 CSDE1O75534 798 aaKnown RBP7.87□□□□□ -1.15
SYNE1-213ENST00000448038 KRT3P12035 628 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 XPAP23025 273 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-213ENST00000448038 OR1G1P47890 313 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 C4orf50Q6ZRC1 276 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 KCNK18Q7Z418 384 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 TTC13Q8NBP0 860 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 MORC4Q8TE76 937 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 TRAPPC12Q8WVT3 735 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 CPB2Q96IY4 423 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 TINF2Q9BSI4 451 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 MTG1Q9BT17 334 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-213ENST00000448038 WNT8AQ9H1J5 351 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 CCDC68Q9H2F9 335 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 RABEP2Q9H5N1 569 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 UBQLN1Q9UMX0 589 aaKnown RBP7.87□□□□□ -1.15
SYNE1-213ENST00000448038 CYP3A7-CYP3A51PA0A087WV96 503 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 SPDYE5A6NIY4 337 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 I3L4J1 428 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 PFDN6O15212 129 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 PSMD10O75832 226 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 SAT1P21673 171 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 CYP3A7P24462 503 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 DHX9Q08211 1270 aaKnown RBP7.87□□□□□ -1.15
SYNE1-213ENST00000448038 BTBD8Q5XKL5 378 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 OSMRQ99650 979 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 PARD6BQ9BYG5 372 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 DPP3Q9NY33 737 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 HDAC6Q9UBN7 1215 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 PPME1Q9Y570 386 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 UBIAD1Q9Y5Z9 338 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 INHBAP08476 426 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 STX2P32856 288 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 VEPH1Q14D04 833 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 DEFB115Q30KQ5 88 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 LRRC31Q6UY01 552 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 LBHD1Q9BQE6 289 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-213ENST00000448038 FAM49BQ9NUQ9 324 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 PCDHB7Q9Y5E2 793 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 GOLGA8KD6RF30 607 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 SART1O43290 800 aaKnown RBP7.87□□□□□ -1.15
SYNE1-213ENST00000448038 MMS22LQ6ZRQ5 1243 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 IL31RAQ8NI17 732 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 MTMR12Q9C0I1 747 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 KCNF1Q9H3M0 494 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 LRP6O75581 1613 aa7.87□□□□□ -1.15
SYNE1-213ENST00000448038 FRMPD4Q14CM0 1322 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 DCDC2CA8MYV0 355 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 AKAP3O75969 853 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 SEC31AO94979 1220 aaKnown RBP7.86□□□□□ -1.15
SYNE1-213ENST00000448038 MAPTP10636 758 aaKnown RBP7.86□□□□□ -1.15
SYNE1-213ENST00000448038 SKIP12755 728 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms