RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 C2CD2Q9Y426 696 aa13.77□□□□□ -0.21
SCLT1-202ENST00000439369 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.77□□□□□ -0.21
SCLT1-202ENST00000439369 P4HA2O15460 535 aa13.76□□□□□ -0.21
SCLT1-202ENST00000439369 N4BP1O75113 896 aaKnown RBP13.76□□□□□ -0.21
SCLT1-202ENST00000439369 RECQL4O94761 1208 aa13.76□□□□□ -0.21
SCLT1-202ENST00000439369 KCNE1P15382 129 aa13.76□□□□□ -0.21
SCLT1-202ENST00000439369 ATF7P17544 494 aaPredicted RBP13.76□□□□□ -0.21
SCLT1-202ENST00000439369 TNFSF9P41273 254 aa13.76□□□□□ -0.21
SCLT1-202ENST00000439369 KRT31Q15323 416 aa13.76□□□□□ -0.21
SCLT1-202ENST00000439369 SLC10A6Q3KNW5 377 aa13.76□□□□□ -0.21
SCLT1-202ENST00000439369 FILIP1LQ4L180 1135 aa13.76□□□□□ -0.21
SCLT1-202ENST00000439369 ALKAL1Q6UXT8 129 aa13.76□□□□□ -0.21
SCLT1-202ENST00000439369 NPAS4Q8IUM7 802 aa13.76□□□□□ -0.21
SCLT1-202ENST00000439369 RDH13Q8NBN7 331 aa13.76□□□□□ -0.21
SCLT1-202ENST00000439369 ZSWIM2Q8NEG5 633 aa13.76□□□□□ -0.21
SCLT1-202ENST00000439369 SLC35C1Q96A29 364 aa13.76□□□□□ -0.21
SCLT1-202ENST00000439369 CGRRF1Q99675 332 aa13.76□□□□□ -0.21
SCLT1-202ENST00000439369 SNTG2Q9NY99 539 aa13.76□□□□□ -0.21
SCLT1-202ENST00000439369 RALGAPA2Q2PPJ7 1873 aa13.76□□□□□ -0.21
SCLT1-202ENST00000439369 SCN5AQ14524 2016 aa13.75□□□□□ -0.21
SCLT1-202ENST00000439369 CBFA2T2O43439 604 aa13.75□□□□□ -0.21
SCLT1-202ENST00000439369 XPOTO43592 962 aaKnown RBP13.75□□□□□ -0.21
SCLT1-202ENST00000439369 SERPINC1P01008 464 aa13.75□□□□□ -0.21
SCLT1-202ENST00000439369 FGBP02675 491 aa13.75□□□□□ -0.21
SCLT1-202ENST00000439369 AMHP03971 560 aa13.75□□□□□ -0.21
SCLT1-202ENST00000439369 TPM3P06753 285 aa13.75□□□□□ -0.21
SCLT1-202ENST00000439369 CXCL8P10145 99 aa13.75□□□□□ -0.21
SCLT1-202ENST00000439369 ATP1A3P13637 1013 aa13.75□□□□□ -0.21
SCLT1-202ENST00000439369 RGS19P49795 217 aa13.75□□□□□ -0.21
SCLT1-202ENST00000439369 COPB1P53618 953 aaKnown RBP13.75□□□□□ -0.21
SCLT1-202ENST00000439369 OSTNP61366 133 aa13.75□□□□□ -0.21
SCLT1-202ENST00000439369 FANCCQ00597 558 aa13.75□□□□□ -0.21
SCLT1-202ENST00000439369 TCTN1Q2MV58 587 aa13.75□□□□□ -0.21
SCLT1-202ENST00000439369 SEZ6Q53EL9 994 aa13.75□□□□□ -0.21
SCLT1-202ENST00000439369 GLB1LQ6UWU2 654 aa13.75□□□□□ -0.21
SCLT1-202ENST00000439369 AGMOQ6ZNB7 445 aa13.75□□□□□ -0.21
SCLT1-202ENST00000439369 APTXQ7Z2E3 356 aaKnown RBP13.75□□□□□ -0.21
SCLT1-202ENST00000439369 TMEM192Q8IY95 271 aa13.75□□□□□ -0.21
SCLT1-202ENST00000439369 CRIPAKQ8N1N5 446 aa13.75□□□□□ -0.21
SCLT1-202ENST00000439369 CACTINQ8WUQ7 758 aaKnown RBP13.75□□□□□ -0.21
SCLT1-202ENST00000439369 MTIF3Q9H2K0 278 aaKnown RBP13.75□□□□□ -0.21
SCLT1-202ENST00000439369 RSAD1Q9HA92 442 aa13.75□□□□□ -0.21
SCLT1-202ENST00000439369 PDE11AQ9HCR9 933 aa13.75□□□□□ -0.21
SCLT1-202ENST00000439369 HES2Q9Y543 173 aa13.75□□□□□ -0.21
SCLT1-202ENST00000439369 PCDHB7Q9Y5E2 793 aa13.75□□□□□ -0.21
SCLT1-202ENST00000439369 BRCA2P51587 3418 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 A0A1B0GTH6 734 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.74□□□□□ -0.21
SCLT1-202ENST00000439369 GTPBP10A4D1E9 387 aaKnown RBP13.74□□□□□ -0.21
SCLT1-202ENST00000439369 LRRIQ3A6PVS8 624 aaPredicted RBP13.74□□□□□ -0.21
SCLT1-202ENST00000439369 LGALS16A8MUM7 142 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 LACTBL1A8MY62 500 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 AFPP02771 609 aaKnown RBP13.74□□□□□ -0.21
SCLT1-202ENST00000439369 CYP3A5P20815 502 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 MRE11P49959 708 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 TMEM132DQ14C87 1099 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 DUOXA2Q1HG44 320 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 VWA3BQ502W6 1294 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 HSP90AA4PQ58FG1 418 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 MIIPQ5JXC2 388 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 TCERG1LQ5VWI1 586 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 PLEKHO2Q8TD55 490 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 CCDC127Q96BQ5 260 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 RPS6KC1Q96S38 1066 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 RNF39Q9H2S5 420 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 NDST4Q9H3R1 872 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 GRPEL1Q9HAV7 217 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 TMEM8AQ9HCN3 771 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 SLC38A7Q9NVC3 462 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 INTS13Q9NVM9 706 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 KANSL3Q9P2N6 904 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 PARP2Q9UGN5 583 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 LRFN2Q9ULH4 789 aa13.74□□□□□ -0.21
SCLT1-202ENST00000439369 ZMYND8Q9ULU4 1186 aaPredicted RBP13.74□□□□□ -0.21
SCLT1-202ENST00000439369 MEFVO15553 781 aaPredicted RBP13.73□□□□□ -0.21
SCLT1-202ENST00000439369 DLATP10515 647 aaKnown RBP13.73□□□□□ -0.21
SCLT1-202ENST00000439369 TNNI1P19237 187 aa13.73□□□□□ -0.21
SCLT1-202ENST00000439369 AKAP5P24588 427 aa13.73□□□□□ -0.21
SCLT1-202ENST00000439369 KCNJ6P48051 423 aa13.73□□□□□ -0.21
SCLT1-202ENST00000439369 FMO5P49326 533 aa13.73□□□□□ -0.21
SCLT1-202ENST00000439369 WDR5P61964 334 aaKnown RBP13.73□□□□□ -0.21
SCLT1-202ENST00000439369 CETN1Q12798 172 aa13.73□□□□□ -0.21
SCLT1-202ENST00000439369 KCNH2Q12809 1159 aa13.73□□□□□ -0.21
SCLT1-202ENST00000439369 ZBTB6Q15916 424 aa13.73□□□□□ -0.21
SCLT1-202ENST00000439369 DCAF17Q5H9S7 520 aaPredicted RBP13.73□□□□□ -0.21
SCLT1-202ENST00000439369 TMEM240Q5SV17 173 aa13.73□□□□□ -0.21
SCLT1-202ENST00000439369 C1orf220Q5T0J3 134 aa13.73□□□□□ -0.21
SCLT1-202ENST00000439369 FKBP15Q5T1M5 1219 aa13.73□□□□□ -0.21
SCLT1-202ENST00000439369 C15orf39Q6ZRI6 1047 aa13.73□□□□□ -0.21
SCLT1-202ENST00000439369 C16orf59Q7L2K0 433 aa13.73□□□□□ -0.21
SCLT1-202ENST00000439369 URGCPQ8TCY9 931 aa13.73□□□□□ -0.21
SCLT1-202ENST00000439369 HERVK_113Q902F9 699 aa13.73□□□□□ -0.21
SCLT1-202ENST00000439369 ANKRD36BP1Q96IX9 119 aa13.73□□□□□ -0.21
SCLT1-202ENST00000439369 APOL6Q9BWW8 343 aa13.73□□□□□ -0.21
SCLT1-202ENST00000439369 RTN4Q9NQC3 1192 aaKnown RBP13.73□□□□□ -0.21
SCLT1-202ENST00000439369 TAB2Q9NYJ8 693 aa13.73□□□□□ -0.21
SCLT1-202ENST00000439369 UBQLN1Q9UMX0 589 aaKnown RBP13.73□□□□□ -0.21
SCLT1-202ENST00000439369 MICAL3Q7RTP6 2002 aa13.73□□□□□ -0.21
SCLT1-202ENST00000439369 SMIM28A0A1B0GU29 152 aa13.72□□□□□ -0.21
SCLT1-202ENST00000439369 ARL5CA6NH57 179 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms