RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 TMEM161AQ9NX61 479 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 CPSF3Q9UKF6 684 aaKnown RBP10.95□□□□□ -0.66
CD44-207ENST00000425428 ZMYND8Q9ULU4 1186 aaPredicted RBP10.95□□□□□ -0.66
CD44-207ENST00000425428 BRCA2P51587 3418 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 TRIP11Q15643 1979 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 TDRD15B5MCY1 1934 aaKnown RBP10.95□□□□□ -0.66
CD44-207ENST00000425428 CARNS1A5YM72 827 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 TTLL13PA6NNM8 815 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 GOLGA6L6A8MZA4 724 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 RECQL4O94761 1208 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 GTF2H1P32780 548 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 MARSP56192 900 aaKnown RBP10.95□□□□□ -0.66
CD44-207ENST00000425428 UBASH3AP57075 661 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 RNASELQ05823 741 aaKnown RBP10.95□□□□□ -0.66
CD44-207ENST00000425428 BIRC3Q13489 604 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 DSC3Q14574 896 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 TMEM132DQ14C87 1099 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 PSMD6Q15008 389 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 ECHDC2Q86YB7 292 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 CBWD2Q8IUF1 395 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 NPAS4Q8IUM7 802 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 BEST2Q8NFU1 509 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 TET1Q8NFU7 2136 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 MFSD14AQ96MC6 490 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 ZBED2Q9BTP6 218 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 MRPL9Q9BYD2 267 aaKnown RBP10.95□□□□□ -0.66
CD44-207ENST00000425428 TRIM5Q9C035 493 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 TMX1Q9H3N1 280 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 NXF3Q9H4D5 531 aaKnown RBP10.95□□□□□ -0.66
CD44-207ENST00000425428 DERAQ9Y315 318 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 RALGAPA2Q2PPJ7 1873 aa10.94□□□□□ -0.66
CD44-207ENST00000425428 AFPP02771 609 aaKnown RBP10.94□□□□□ -0.66
CD44-207ENST00000425428 EDN1P05305 212 aa10.94□□□□□ -0.66
CD44-207ENST00000425428 CXCL8P10145 99 aa10.94□□□□□ -0.66
CD44-207ENST00000425428 AKAP5P24588 427 aa10.94□□□□□ -0.66
CD44-207ENST00000425428 CASP4P49662 377 aa10.94□□□□□ -0.66
CD44-207ENST00000425428 MRE11P49959 708 aa10.94□□□□□ -0.66
CD44-207ENST00000425428 TFAMQ00059 246 aaKnown RBP10.94□□□□□ -0.66
CD44-207ENST00000425428 TRPC3Q13507 836 aa10.94□□□□□ -0.66
CD44-207ENST00000425428 NCAPHQ15003 741 aa10.94□□□□□ -0.66
CD44-207ENST00000425428 SEZ6Q53EL9 994 aa10.94□□□□□ -0.66
CD44-207ENST00000425428 CDKAL1Q5VV42 579 aa10.94□□□□□ -0.66
CD44-207ENST00000425428 MRPL10Q7Z7H8 261 aaKnown RBP10.94□□□□□ -0.66
CD44-207ENST00000425428 WDR49Q8IV35 697 aa10.94□□□□□ -0.66
CD44-207ENST00000425428 KIF12Q96FN5 646 aa10.94□□□□□ -0.66
CD44-207ENST00000425428 RBSNQ9H1K0 784 aa10.94□□□□□ -0.66
CD44-207ENST00000425428 IKZF4Q9H2S9 585 aa10.94□□□□□ -0.66
CD44-207ENST00000425428 MMRN2Q9H8L6 949 aa10.94□□□□□ -0.66
CD44-207ENST00000425428 C9IYK1 514 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 UPP2O95045 317 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 THP07101 528 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 TPM1P09493 284 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 ACRP10323 421 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 ATF7P17544 494 aaPredicted RBP10.93□□□□□ -0.66
CD44-207ENST00000425428 TNFSF9P41273 254 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 FANCCQ00597 558 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 ENOX2Q16206 610 aaKnown RBP10.93□□□□□ -0.66
CD44-207ENST00000425428 VWA3BQ502W6 1294 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 UBXN11Q5T124 520 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 OTOP2Q7RTS6 562 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 CGRRF1Q99675 332 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 DNAI2Q9GZS0 605 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 VPS16Q9H269 839 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 LIMA1Q9UHB6 759 aaKnown RBP10.93□□□□□ -0.66
CD44-207ENST00000425428 UBQLN1Q9UMX0 589 aaKnown RBP10.93□□□□□ -0.66
CD44-207ENST00000425428 C2CD2Q9Y426 696 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 HES2Q9Y543 173 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 SLC4A7Q9Y6M7 1214 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 TTC3P53804 2025 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 LACTBL1A8MY62 500 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 ABLIM1O14639 778 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 P4HA2O15460 535 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 MGEA5O60502 916 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 MXI1P50539 228 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 FAM189BP81408 668 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 UBXN1Q04323 297 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 KCNH2Q12809 1159 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 KRT31Q15323 416 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 WDR44Q5JSH3 913 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 SPOUT1Q5T280 376 aaKnown RBP10.93□□□□□ -0.66
CD44-207ENST00000425428 KRT39Q6A163 491 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 ZNF365Q70YC5 407 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 TRIM59Q8IWR1 403 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 CEP120Q8N960 986 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 SMG8Q8ND04 991 aaKnown RBP10.93□□□□□ -0.66
CD44-207ENST00000425428 PARD3BQ8TEW8 1205 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 SNX27Q96L92 541 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 NDST4Q9H3R1 872 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 GRPEL1Q9HAV7 217 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 TMEM8AQ9HCN3 771 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 PDE11AQ9HCR9 933 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 TAB2Q9NYJ8 693 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 KLK14Q9P0G3 267 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 INPP5FQ9Y2H2 1132 aa10.93□□□□□ -0.66
CD44-207ENST00000425428 ARL5CA6NH57 179 aa10.92□□□□□ -0.66
CD44-207ENST00000425428 ADRB2P07550 413 aa10.92□□□□□ -0.66
CD44-207ENST00000425428 KRT19P08727 400 aa10.92□□□□□ -0.66
CD44-207ENST00000425428 P4HA1P13674 534 aa10.92□□□□□ -0.66
CD44-207ENST00000425428 ZNF18P17022 549 aa10.92□□□□□ -0.66
CD44-207ENST00000425428 TRIM21P19474 475 aaKnown RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms