RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, human

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13A-208	ENST00000423463	WDR48	Q8TAF3	677 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	UTP14A	Q9BVJ6	771 aa	Known RBP	3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	SPC25	Q9HBM1	224 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	EMC7	Q9NPA0	242 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	ACSS2	Q9NR19	701 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	ADAM29	Q9UKF5	820 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	ZNF536	O15090	1300 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	IBTK	Q9P2D0	1353 aa	Predicted RBP	3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	NTSR2	O95665	410 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	C4A	P0C0L4	1744 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	HSP90B1	P14625	803 aa	Known RBP	3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	CHRNA5	P30532	468 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	CSF2RB	P32927	897 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	FNTB	P49356	437 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	KIAA2012	Q0VF49	1180 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	NEXN	Q0ZGT2	675 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	TBR1	Q16650	682 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	ALDH1L2	Q3SY69	923 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	CT47A1	Q5JQC4	288 aa	Predicted RBP	3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	GRAMD4	Q6IC98	578 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	FILIP1	Q7Z7B0	1213 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	KLHL36	Q8N4N3	616 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	EFHB	Q8N7U6	833 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	OR2W6P	Q8NHA6	318 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	TEPSIN	Q96N21	525 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	LRRC37B	Q96QE4	947 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	ORAI3	Q9BRQ5	295 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	MYL10	Q9BUA6	226 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	JADE2	Q9NQC1	790 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	PXDNL	A1KZ92	1463 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	UBN2	Q6ZU65	1347 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	SH3TC1	Q8TE82	1336 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	PI4KAP2	A4QPH2	592 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	KRTAP9-7	A8MTY7	169 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	TCERG1	O14776	1098 aa	Known RBP	3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	FOXD2	O60548	495 aa	Predicted RBP	3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	CYP17A1	P05093	508 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	SRGN	P10124	158 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	NPR1	P16066	1061 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	APEX1	P27695	318 aa	Known RBP	3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	CNGA1	P29973	690 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	ALDH1B1	P30837	517 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	SMAD3	P84022	425 aa	Known RBP	3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	ACAP1	Q15027	740 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	STIL	Q15468	1287 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	PTPRO	Q16827	1216 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	RNF151	Q2KHN1	245 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	LHFPL2	Q6ZUX7	228 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	G2E3	Q7L622	706 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	LGI4	Q8N135	537 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	BCL6B	Q8N143	479 aa	Predicted RBP	3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	PI4KAP1	Q8N8J0	262 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	CCDC191	Q8NCU4	936 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	CALML6	Q8TD86	181 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	MASTL	Q96GX5	879 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	GNRHR2	Q96P88	292 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	MYD88	Q99836	296 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	FOXB1	Q99853	325 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	TRMT112	Q9UI30	125 aa	Known RBP	3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	MSRA	Q9UJ68	235 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	MAPRE3	Q9UPY8	281 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	MAP3K2	Q9Y2U5	619 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463	LAMB4	A4D0S4	1761 aa		3.1	□□□□□ -1.91
VPS13A-208	ENST00000423463		A0A0G2JNJ9	132 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	LAMTOR5	O43504	91 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	CHGB	P05060	677 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	PCCA	P05165	728 aa	Predicted RBP	3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	HMGB1	P09429	215 aa	Known RBP	3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	ETV4	P43268	484 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	ANTXR2	P58335	489 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	ROM1	Q03395	351 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	CRY2	Q49AN0	593 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	TTC38	Q5R3I4	469 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	ZBTB41	Q5SVQ8	909 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	BROX	Q5VW32	411 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	DPP8	Q6V1X1	898 aa	Predicted RBP	3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	ANKRD13A	Q8IZ07	590 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	AHI1	Q8N157	1196 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	LINS1	Q8NG48	757 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	OR14K1	Q8NGZ2	314 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	DNAAF4	Q8WXU2	420 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	USP7	Q93009	1102 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	ZNF622	Q969S3	477 aa	Known RBP eCLIP	3.09	□□□□□ -1.91	2e-6	■■□□□ 14.2
VPS13A-208	ENST00000423463	RBM17	Q96I25	401 aa	Known RBP	3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	GPATCH3	Q96I76	525 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	CRAMP1	Q96RY5	1269 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	DPYSL5	Q9BPU6	564 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	ZDHHC5	Q9C0B5	715 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	MTG2	Q9H4K7	406 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	CWC25	Q9NXE8	425 aa	Predicted RBP	3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463		Q9UFV3	132 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	RIC1	Q4ADV7	1423 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	ZBED9	Q6R2W3	1325 aa		3.09	□□□□□ -1.91
VPS13A-208	ENST00000423463	ALDH1L1	O75891	902 aa		3.09	□□□□□ -1.92
VPS13A-208	ENST00000423463	IGKV5-2	P06315	115 aa		3.09	□□□□□ -1.92
VPS13A-208	ENST00000423463	CLEC2L	P0C7M8	214 aa		3.09	□□□□□ -1.92
VPS13A-208	ENST00000423463	MRE11	P49959	708 aa		3.09	□□□□□ -1.92
VPS13A-208	ENST00000423463	TMPRSS15	P98073	1019 aa		3.09	□□□□□ -1.92
VPS13A-208	ENST00000423463	ADAM15	Q13444	863 aa		3.09	□□□□□ -1.92

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