RNA–Protein interactions for RNA: ENST00000418170.5

HMGXB4-202, Transcript of HMG-box containing 4, humanhuman

TSL 1 (best)

Gene HMGXB4, Length 4,216 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-202ENST00000418170 WDR60Q8WVS4 1066 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 CRNKL1Q9BZJ0 848 aaKnown RBP8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 TMEM260Q9NX78 707 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 A8MXQ7 604 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 PLSCR1O15162 318 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 GYG2O15488 501 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 TMCC1O94876 653 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 ETS2P15036 469 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 ABCD1P33897 745 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 NT5C2P49902 561 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 BPIFB4P59827 614 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 NR1H3Q13133 447 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 TCEAL1Q15170 157 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 HYIQ5T013 277 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 CEP128Q6ZU80 1094 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 DNAJC10Q8IXB1 793 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 NAT14Q8WUY8 206 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 SNF8Q96H20 258 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 TUBB6Q9BUF5 446 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 MXD3Q9BW11 206 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 STK33Q9BYT3 514 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 GRID1Q9ULK0 1009 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 ZNF232Q9UNY5 417 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 WASF2Q9Y6W5 498 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 ZMYM2Q9UBW7 1377 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 NPHP3-ACAD11A0A0J9YXS1 232 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 ESYT2A0FGR8 921 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 IVDP26440 423 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 CCNFP41002 786 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 CASP5P51878 434 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 CACNB1Q02641 598 aaPredicted RBP8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 OTOAQ7RTW8 1153 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 TRABD2AQ86V40 505 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 MCUR1Q96AQ8 359 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 LBHD1Q9BQE6 289 aaPredicted RBP8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 CCDC77Q9BR77 488 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 WNT8AQ9H1J5 351 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 DNAJC18Q9H819 358 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 TYW1Q9NV66 732 aaKnown RBP8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 ETNK2Q9NVF9 386 aa8.54□□□□□ -1.04
HMGXB4-202ENST00000418170 KDM3AQ9Y4C1 1321 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 ADAMTS2O95450 1211 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 GOLGA8HP0CJ92 632 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 DSG1Q02413 1049 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 CAV1Q03135 178 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 MAP7Q14244 749 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 KNOP1Q1ED39 458 aaKnown RBP8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 PHLDB3Q6NSJ2 640 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 PALB2Q86YC2 1186 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 TRIM42Q8IWZ5 723 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 ST13P4Q8IZP2 240 aaPredicted RBP8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 CD101Q93033 1021 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 LENG1Q96BZ8 264 aaPredicted RBP8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 DNAJC17Q9NVM6 304 aaKnown RBP8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 ASIC3Q9UHC3 531 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 ANGPTL2Q9UKU9 493 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 FRMPD4Q14CM0 1322 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 HNRNPRO43390 633 aaKnown RBP8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 PFDN1O60925 122 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 SPAG7O75391 227 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 ITGA2BP08514 1039 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 PLA2G4BP0C869 781 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 CYP11B2P19099 503 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 TNFAIP3P21580 790 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 COMTP21964 271 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 DRAP1Q14919 205 aaPredicted RBP8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 TMED2Q15363 201 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 RNF207Q6ZRF8 634 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 SPATA24Q86W54 205 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 GPBP1Q86WP2 473 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 KIAA0825Q8IV33 1275 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 NME8Q8N427 588 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 ZCRB1Q8TBF4 217 aaKnown RBP8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 CPVLQ9H3G5 476 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 HSFX1Q9UBD0 423 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 E9PMD0 336 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 PDXKO00764 312 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 SLC16A3O15427 465 aaKnown RBP8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 HOXD13P35453 343 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 ITGA8P53708 1063 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 PLEKHG4Q58EX7 1191 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 RBM26Q5T8P6 1007 aaKnown RBP8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 IZUMO2Q6UXV1 221 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 VPS52Q8N1B4 723 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 MORC4Q8TE76 937 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 ECSITQ9BQ95 431 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 GPR88Q9GZN0 384 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 NPHS2Q9NP85 383 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 ARL8BQ9NVJ2 186 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 SMG5Q9UPR3 1016 aaKnown RBP8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 MTMR7Q9Y216 660 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 TNRC6CQ9HCJ0 1690 aaKnown RBP8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 HAUS5O94927 633 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 CRABP2P29373 138 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 GYG1P46976 350 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 CHRNDQ07001 517 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 PTK6Q13882 451 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 FYB2Q5VWT5 728 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 RELL1Q8IUW5 271 aa8.53□□□□□ -1.04
HMGXB4-202ENST00000418170 SCYL3Q8IZE3 742 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms