RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 ZKSCAN4Q969J2 545 aaPredicted RBP10.1□□□□□ -0.79
SNHG3-201ENST00000413987 UNC45AQ9H3U1 944 aa10.1□□□□□ -0.79
SNHG3-201ENST00000413987 ADARB2Q9NS39 739 aaKnown RBP10.1□□□□□ -0.79
SNHG3-201ENST00000413987 KCNH3Q9ULD8 1083 aa10.1□□□□□ -0.79
SNHG3-201ENST00000413987 PPT2Q9UMR5 302 aa10.1□□□□□ -0.79
SNHG3-201ENST00000413987 AGTPBP1Q9UPW5 1226 aa10.1□□□□□ -0.79
SNHG3-201ENST00000413987 CNTNAP5Q8WYK1 1306 aa10.1□□□□□ -0.79
SNHG3-201ENST00000413987 LINC00854A0A1B0GVQ3 168 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 KIF28PB7ZC32 967 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 H0YHG0 523 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 EIF1AYO14602 144 aaKnown RBP10.09□□□□□ -0.79
SNHG3-201ENST00000413987 OPA1O60313 960 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 GRIN3BO60391 1043 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 MFAP3LO75121 409 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 KRT1P04264 644 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 PF4V1P10720 104 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 PDHBP11177 359 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 IFNAR1P17181 557 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 TAL1P17542 331 aaPredicted RBP10.09□□□□□ -0.79
SNHG3-201ENST00000413987 MAGEA8P43361 318 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 AP3B2Q13367 1082 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 TNFAIP1Q13829 316 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 PKN1Q16512 942 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 NOA1Q8NC60 698 aaKnown RBP10.09□□□□□ -0.79
SNHG3-201ENST00000413987 SLC7A3Q8WY07 619 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 ANKS1AQ92625 1134 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 GPKOWQ92917 476 aaPredicted RBP eCLIP10.09□□□□□ -0.792e-47■□□□□ 10.3
SNHG3-201ENST00000413987 ALPK1Q96QP1 1244 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 CHCHD6Q9BRQ6 235 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 TCHPQ9BT92 498 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 MYLK2Q9H1R3 596 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 STARD7Q9NQZ5 370 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 VPS54Q9P1Q0 977 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 MAN1B1Q9UKM7 699 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 NID2Q14112 1375 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 COL2A1P02458 1487 aaPredicted RBP10.09□□□□□ -0.79
SNHG3-201ENST00000413987 GLTPD2A6NH11 291 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 PHF20L1A8MW92 1017 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 PLOD2O00469 737 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 RFPL3O75679 317 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 PARP1P09874 1014 aaKnown RBP10.09□□□□□ -0.79
SNHG3-201ENST00000413987 VCAM1P19320 739 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 EPHX2P34913 555 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 GGCXP38435 758 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 SNAP25P60880 206 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 GRM4Q14833 912 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 POSTNQ15063 836 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 PTPAQ15257 358 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 ASIC2Q16515 512 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 PTPN21Q16825 1174 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 FBXW10Q5XX13 1052 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 CNNM4Q6P4Q7 775 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 BEND5Q7L4P6 421 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 YTHDF3Q7Z739 585 aaKnown RBP10.09□□□□□ -0.79
SNHG3-201ENST00000413987 ZNF296Q8WUU4 475 aaPredicted RBP10.09□□□□□ -0.79
SNHG3-201ENST00000413987 CLIC6Q96NY7 704 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 LSM14BQ9BX40 385 aaKnown RBP10.09□□□□□ -0.79
SNHG3-201ENST00000413987 PCDHB3Q9Y5E6 796 aa10.09□□□□□ -0.79
SNHG3-201ENST00000413987 DNAJC25-GNG10A0A024R161 153 aa10.08□□□□□ -0.8
SNHG3-201ENST00000413987 KLRF2D3W0D1 207 aa10.08□□□□□ -0.8
SNHG3-201ENST00000413987 P4HA2O15460 535 aa10.08□□□□□ -0.8
SNHG3-201ENST00000413987 DKC1O60832 514 aaKnown RBP eCLIP10.08□□□□□ -0.81e-323■■■■■ 48.7
SNHG3-201ENST00000413987 STAT1P42224 750 aa10.08□□□□□ -0.8
SNHG3-201ENST00000413987 NOVP48745 357 aa10.08□□□□□ -0.8
SNHG3-201ENST00000413987 SETMARQ53H47 684 aaPredicted RBP10.08□□□□□ -0.8
SNHG3-201ENST00000413987 TMEM179Q6ZVK1 233 aa10.08□□□□□ -0.8
SNHG3-201ENST00000413987 MOB2Q70IA6 237 aa10.08□□□□□ -0.8
SNHG3-201ENST00000413987 LRRTM3Q86VH5 581 aa10.08□□□□□ -0.8
SNHG3-201ENST00000413987 LRGUKQ96M69 825 aa10.08□□□□□ -0.8
SNHG3-201ENST00000413987 SLC7A5P2Q9GIP4 190 aa10.08□□□□□ -0.8
SNHG3-201ENST00000413987 EPN1Q9Y6I3 576 aaPredicted RBP10.08□□□□□ -0.8
SNHG3-201ENST00000413987 CAPN7Q9Y6W3 813 aa10.08□□□□□ -0.8
SNHG3-201ENST00000413987 RRN3P2A6NIE6 340 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 CDKL5O76039 1030 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 GJB6O95452 261 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 RPS2P15880 293 aaKnown RBP10.07□□□□□ -0.8
SNHG3-201ENST00000413987 BMP6P22004 513 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 PBX1P40424 430 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 SLC7A5Q01650 507 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 WDR44Q5JSH3 913 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 KRT40Q6A162 431 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 C16orf46Q6P387 395 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 BTNL9Q6UXG8 535 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 TRAPPC11Q7Z392 1133 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 ATCAYQ86WG3 371 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 SLFN12Q8IYM2 578 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 SLAIN1Q8ND83 568 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 ZNF606Q8WXB4 792 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 GMCL1Q96IK5 515 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 SGCZQ96LD1 299 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 CCDC17Q96LX7 622 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 WRNIP1Q96S55 665 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 PCDHB9Q9Y5E1 797 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 MEFVO15553 781 aaPredicted RBP10.07□□□□□ -0.8
SNHG3-201ENST00000413987 MTRF1O75570 445 aaKnown RBP10.07□□□□□ -0.8
SNHG3-201ENST00000413987 FBXO21O94952 628 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 APBB3O95704 486 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 CALM1P0DP23 149 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 CALM2P0DP24 149 aa10.07□□□□□ -0.8
SNHG3-201ENST00000413987 CALM3P0DP25 149 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms