RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 GCNT1Q02742 428 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 RNF207Q6ZRF8 634 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 RPUSD2Q8IZ73 545 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 DAW1Q8N136 415 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 ANKRD35Q8N283 1001 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 XXYLT1Q8NBI6 393 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 ATL2Q8NHH9 583 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 AGAP11Q8TF27 550 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 PCDHB18PQ96TA0 734 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 ECT2Q9H8V3 914 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 GOPCQ9HD26 462 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 ABCF3Q9NUQ8 709 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 LNPEPQ9UIQ6 1025 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 CORO1CQ9ULV4 474 aaPredicted RBP6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 IVNS1ABPQ9Y6Y0 642 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 EMSYQ7Z589 1322 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 CCDC189A1A4V9 331 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 EXOC3O60645 756 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 NDUFB10O96000 172 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 VIMP08670 466 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 UNGP13051 313 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 PLS3P13797 630 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 TSHRP16473 764 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 ABCB4P21439 1286 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 POLD1P28340 1107 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 MSH2P43246 934 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 MNX1P50219 401 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 ALDH5A1P51649 535 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 GTF2IP78347 998 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 GRIK3Q13003 919 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 CCDC38Q502W7 563 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 CEP55Q53EZ4 464 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 WASHC2DQ5SRD0 308 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 ODR4Q5SWX8 454 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 TRIM72Q6ZMU5 477 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 PODNQ7Z5L7 613 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 USP37Q86T82 979 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 NOP9Q86U38 636 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 AMIGO3Q86WK7 504 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 CEP57Q86XR8 500 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 CCDC105Q8IYK2 499 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 OGFOD1Q8N543 542 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 CCDC89Q8N998 374 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 DENND1AQ8TEH3 1009 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 SLC20A1Q8WUM9 679 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 MAML1Q92585 1016 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 KIFAP3Q92845 792 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 ZNF622Q969S3 477 aaKnown RBP eCLIP6.12□□□□□ -1.432e-7■■□□□ 14.1
CCDC88A-203ENST00000412148 DYDC2Q96IM9 177 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 SCLT1Q96NL6 688 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 CCDC77Q9BR77 488 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 TRIM6Q9C030 488 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 DCLK3Q9C098 648 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 C17orf75Q9HAS0 396 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 UBE2TQ9NPD8 197 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 SAR1AQ9NR31 198 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 TMOD4Q9NZQ9 345 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 SMG5Q9UPR3 1016 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 FER1L6Q2WGJ9 1857 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 MYH9P35579 1960 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 POM121CA8CG34 1229 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 DCTN3O75935 186 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 ASMTLO95671 621 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 LMNAP02545 664 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 GNAZP19086 355 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 MARCKSL1P49006 195 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 HSD17B4P51659 736 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 LACTBP83111 547 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 KRT17Q04695 432 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 PPP3CAQ08209 521 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 ZNF211Q13398 564 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 PRPF4BQ13523 1007 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 MOGSQ13724 837 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 BLMHQ13867 455 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 CLEC16AQ2KHT3 1053 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 ZC2HC1CQ53FD0 456 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 EAPPQ56P03 285 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 FAM91A1Q658Y4 838 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 CDCA2Q69YH5 1023 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 ARHGEF19Q8IW93 802 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 KATNAL2Q8IYT4 538 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 ZCCHC9Q8N567 271 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 CEP120Q8N960 986 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 RDM1Q8NG50 284 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 HELQQ8TDG4 1101 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 FBF1Q8TES7 1133 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 NSMCE1Q8WV22 266 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 KLHL29Q96CT2 875 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 MFSD14AQ96MC6 490 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 NTPCRQ9BSD7 190 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 NUP85Q9BW27 656 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 TEKT3Q9BXF9 490 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 TRIM31Q9BZY9 425 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 TMEM8AQ9HCN3 771 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 RGL1Q9NZL6 768 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 KLHL14Q9P2G3 628 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 HERC5Q9UII4 1024 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 SERPINA10Q9UK55 444 aa6.12□□□□□ -1.43
CCDC88A-203ENST00000412148 KIAA1217Q5T5P2 1943 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms