RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 GSDMAQ96QA5 445 aa10.11□□□□□ -0.79
VPS53-203ENST00000401468 MAP7D2Q96T17 732 aa10.11□□□□□ -0.79
VPS53-203ENST00000401468 APOL5Q9BWW9 433 aa10.11□□□□□ -0.79
VPS53-203ENST00000401468 PHLPP2Q6ZVD8 1323 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 MEIS3P2A8K0S8 358 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 TBX10O75333 385 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 RPN1P04843 607 aaKnown RBP10.1□□□□□ -0.79
VPS53-203ENST00000401468 DARSP14868 501 aaKnown RBP10.1□□□□□ -0.79
VPS53-203ENST00000401468 SP100P23497 879 aaPredicted RBP10.1□□□□□ -0.79
VPS53-203ENST00000401468 CASP1P29466 404 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 ABCD1P33897 745 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 LTBRP36941 435 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 GTF2BQ00403 316 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 RAD51AP2Q09MP3 1159 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 COASYQ13057 564 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 DMP1Q13316 513 aaPredicted RBP10.1□□□□□ -0.79
VPS53-203ENST00000401468 PNOCQ13519 176 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 DHX8Q14562 1220 aaKnown RBP10.1□□□□□ -0.79
VPS53-203ENST00000401468 NFKBIBQ15653 356 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 AMHR2Q16671 573 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 PTPROQ16827 1216 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 AAK1Q2M2I8 961 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 COBLL1Q53SF7 1204 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 EPM2AIP1Q7L775 607 aaPredicted RBP10.1□□□□□ -0.79
VPS53-203ENST00000401468 DYMQ7RTS9 669 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 SRGAP1Q7Z6B7 1085 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 RHPN2Q8IUC4 686 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 NPAS4Q8IUM7 802 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 CCDC65Q8IXS2 484 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 CRIPAKQ8N1N5 446 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 TMEM161BQ8NDZ6 487 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 FZD8Q9H461 694 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 NSUN3Q9H649 340 aaKnown RBP10.1□□□□□ -0.79
VPS53-203ENST00000401468 RNF19AQ9NV58 838 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 PANK4Q9NVE7 773 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 CDH22Q9UJ99 828 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 HOOK1Q9UJC3 728 aaKnown RBP10.1□□□□□ -0.79
VPS53-203ENST00000401468 COG5Q9UP83 839 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 PLAGL2Q9UPG8 496 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 PCDHB7Q9Y5E2 793 aa10.1□□□□□ -0.79
VPS53-203ENST00000401468 VWA8A3KMH1 1905 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 A0A087WZ62 844 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.09□□□□□ -0.79
VPS53-203ENST00000401468 C9IYK1 514 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 NT5C1B-RDH14C9J2C7 533 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 H0YCG3 227 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 EIF3DO15371 548 aaKnown RBP eCLIP10.09□□□□□ -0.79
VPS53-203ENST00000401468 TRAK2O60296 914 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 TBCAO75347 108 aaKnown RBP10.09□□□□□ -0.79
VPS53-203ENST00000401468 ZMYND10O75800 440 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 FAM13AO94988 1023 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 JUNDP17535 347 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 EIF4BP23588 611 aaKnown RBP10.09□□□□□ -0.79
VPS53-203ENST00000401468 NRIP1P48552 1158 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 EFNA5P52803 228 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 ASIC1P78348 528 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 MBTD1Q05BQ5 628 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 PSMD2Q13200 908 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 TFDP1Q14186 410 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 BMT2Q1RMZ1 405 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 SKOR2Q2VWA4 1001 aaPredicted RBP10.09□□□□□ -0.79
VPS53-203ENST00000401468 TIGD5Q53EQ6 642 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 ODR4Q5SWX8 454 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 LLGL2Q6P1M3 1020 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 LRRC55Q6ZSA7 311 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 TAS1R3Q7RTX0 852 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 ZNF720Q7Z2F6 126 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 SFR1Q86XK3 245 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 RNF149Q8NC42 400 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 FEZF2Q8TBJ5 459 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 SPPL3Q8TCT6 385 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 HELQQ8TDG4 1101 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 TMEM174Q8WUU8 243 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 POF1BQ8WVV4 589 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 CLP1Q92989 425 aaKnown RBP10.09□□□□□ -0.79
VPS53-203ENST00000401468 HVCN1Q96D96 273 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 IFT74Q96LB3 600 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 NLRP4Q96MN2 994 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 FDXACB1Q9BRP7 624 aaPredicted RBP10.09□□□□□ -0.79
VPS53-203ENST00000401468 C11orf84Q9BUA3 381 aaPredicted RBP10.09□□□□□ -0.79
VPS53-203ENST00000401468 GTPBP4Q9BZE4 634 aaKnown RBP10.09□□□□□ -0.79
VPS53-203ENST00000401468 NUP62CLQ9H1M0 184 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 C2orf40Q9H1Z8 148 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 BLZF1Q9H2G9 400 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 MINDY3Q9H8M7 445 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 TYW1Q9NV66 732 aaKnown RBP10.09□□□□□ -0.79
VPS53-203ENST00000401468 TMEM63CQ9P1W3 806 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 BARX2Q9UMQ3 279 aaPredicted RBP10.09□□□□□ -0.79
VPS53-203ENST00000401468 PCDHA5Q9Y5H7 936 aa10.09□□□□□ -0.79
VPS53-203ENST00000401468 UBE4BO95155 1302 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 DENND4AQ7Z401 1863 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 KMT2EQ8IZD2 1858 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 TECTAO75443 2155 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 SFI1A8K8P3 1242 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 SMC2O95347 1197 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 AVPP01185 164 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 PIGRP01833 764 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 KRT18P05783 430 aaKnown RBP10.08□□□□□ -0.8
VPS53-203ENST00000401468 STAG3L1P0CL83 205 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 BMP6P22004 513 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms