RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 ZNF394Q53GI3 561 aa12.67□□□□□ -0.38
SKA3-203ENST00000400018 TWF2Q6IBS0 349 aaKnown RBP12.67□□□□□ -0.38
SKA3-203ENST00000400018 IQCEQ6IPM2 695 aa12.67□□□□□ -0.38
SKA3-203ENST00000400018 TRIM65Q6PJ69 517 aa12.67□□□□□ -0.38
SKA3-203ENST00000400018 MPZL3Q6UWV2 235 aa12.67□□□□□ -0.38
SKA3-203ENST00000400018 CELF4Q9BZC1 486 aaKnown RBP12.67□□□□□ -0.38
SKA3-203ENST00000400018 CNTNAP2Q9UHC6 1331 aa12.67□□□□□ -0.38
SKA3-203ENST00000400018 EXTL3O43909 919 aa12.67□□□□□ -0.38
SKA3-203ENST00000400018 VNN1O95497 513 aa12.67□□□□□ -0.38
SKA3-203ENST00000400018 SLC10A6Q3KNW5 377 aa12.67□□□□□ -0.38
SKA3-203ENST00000400018 CACNA2D4Q7Z3S7 1137 aa12.67□□□□□ -0.38
SKA3-203ENST00000400018 SERINC5Q86VE9 423 aa12.67□□□□□ -0.38
SKA3-203ENST00000400018 PPM1KQ8N3J5 372 aa12.67□□□□□ -0.38
SKA3-203ENST00000400018 FNBP1Q96RU3 617 aa12.67□□□□□ -0.38
SKA3-203ENST00000400018 GCOM2Q9BZD3 368 aaPredicted RBP12.67□□□□□ -0.38
SKA3-203ENST00000400018 HCSTQ9UBK5 93 aa12.67□□□□□ -0.38
SKA3-203ENST00000400018 F8W810 466 aa12.66□□□□□ -0.38
SKA3-203ENST00000400018 HCRTO43612 131 aa12.66□□□□□ -0.38
SKA3-203ENST00000400018 GFPT2O94808 682 aa12.66□□□□□ -0.38
SKA3-203ENST00000400018 RAP1GAPP47736 663 aa12.66□□□□□ -0.38
SKA3-203ENST00000400018 MXI1P50539 228 aa12.66□□□□□ -0.38
SKA3-203ENST00000400018 PTPROQ16827 1216 aa12.66□□□□□ -0.38
SKA3-203ENST00000400018 JADE1Q6IE81 842 aa12.66□□□□□ -0.38
SKA3-203ENST00000400018 TSHZ1Q6ZSZ6 1077 aa12.66□□□□□ -0.38
SKA3-203ENST00000400018 PCSK9Q8NBP7 692 aaKnown RBP12.66□□□□□ -0.38
SKA3-203ENST00000400018 NEK11Q8NG66 645 aa12.66□□□□□ -0.38
SKA3-203ENST00000400018 LMO3Q8TAP4 145 aa12.66□□□□□ -0.38
SKA3-203ENST00000400018 PAWRQ96IZ0 340 aaKnown RBP12.66□□□□□ -0.38
SKA3-203ENST00000400018 INTS2Q9H0H0 1204 aaKnown RBP12.66□□□□□ -0.38
SKA3-203ENST00000400018 UBE2TQ9NPD8 197 aaPredicted RBP12.66□□□□□ -0.38
SKA3-203ENST00000400018 PAK6Q9NQU5 681 aaPredicted RBP12.66□□□□□ -0.38
SKA3-203ENST00000400018 PARP2Q9UGN5 583 aa12.66□□□□□ -0.38
SKA3-203ENST00000400018 ZKSCAN5Q9Y2L8 839 aa12.66□□□□□ -0.38
SKA3-203ENST00000400018 UBE4BO95155 1302 aa12.66□□□□□ -0.38
SKA3-203ENST00000400018 UCHL3P15374 230 aa12.66□□□□□ -0.38
SKA3-203ENST00000400018 EFNA5P52803 228 aa12.66□□□□□ -0.38
SKA3-203ENST00000400018 MARSP56192 900 aaKnown RBP12.66□□□□□ -0.38
SKA3-203ENST00000400018 MRPS6P82932 125 aaKnown RBP12.66□□□□□ -0.38
SKA3-203ENST00000400018 PAN2Q504Q3 1202 aaKnown RBP12.66□□□□□ -0.38
SKA3-203ENST00000400018 DEFB128Q7Z7B8 93 aa12.66□□□□□ -0.38
SKA3-203ENST00000400018 SLC9A9Q8IVB4 645 aa12.66□□□□□ -0.38
SKA3-203ENST00000400018 BAP1Q92560 729 aa12.66□□□□□ -0.38
SKA3-203ENST00000400018 ERGIC2Q96RQ1 377 aa12.66□□□□□ -0.38
SKA3-203ENST00000400018 BAG1Q99933 345 aaPredicted RBP12.66□□□□□ -0.38
SKA3-203ENST00000400018 JPH2Q9BR39 696 aaPredicted RBP12.66□□□□□ -0.38
SKA3-203ENST00000400018 GANQ9H2C0 597 aa12.66□□□□□ -0.38
SKA3-203ENST00000400018 APOBEC3GQ9HC16 384 aaKnown RBP12.66□□□□□ -0.38
SKA3-203ENST00000400018 PLCB1Q9NQ66 1216 aa12.66□□□□□ -0.38
SKA3-203ENST00000400018 LUC7L2Q9Y383 392 aaKnown RBP12.66□□□□□ -0.38
SKA3-203ENST00000400018 COL1A2P08123 1366 aa12.66□□□□□ -0.38
SKA3-203ENST00000400018 TMCO5BA8MYB1 307 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 KBTBD13C9JR72 458 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 SLC16A3O15427 465 aaKnown RBP12.65□□□□□ -0.38
SKA3-203ENST00000400018 RPS6KA5O75582 802 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 PROZP22891 400 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 HOXC8P31273 242 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 ALCAMQ13740 583 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 HS1BP3Q53T59 392 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 C2CD6Q53TS8 623 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 PHLDB2Q86SQ0 1253 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 SECISBP2LQ93073 1101 aaKnown RBP12.65□□□□□ -0.38
SKA3-203ENST00000400018 FBXL18Q96ME1 805 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 TRIM6Q9C030 488 aaPredicted RBP12.65□□□□□ -0.38
SKA3-203ENST00000400018 PRMT7Q9NVM4 692 aaPredicted RBP12.65□□□□□ -0.38
SKA3-203ENST00000400018 TUBGCP4Q9UGJ1 667 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 CPSF3Q9UKF6 684 aaKnown RBP12.65□□□□□ -0.38
SKA3-203ENST00000400018 PADI3Q9ULW8 664 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 POLIQ9UNA4 740 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 ATP11BQ9Y2G3 1177 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 A0A1B0GUA9 196 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 GOLGA6L6A8MZA4 724 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 OGTO15294 1046 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 CKBP12277 381 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 CD58P19256 250 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 GARTP22102 1010 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 CYP2C18P33260 490 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 CDH8P55286 799 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 MYL6P60660 151 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 MCL1Q07820 350 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 KCTD19Q17RG1 926 aaPredicted RBP12.65□□□□□ -0.38
SKA3-203ENST00000400018 CHD9Q3L8U1 2897 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 TRIM60Q495X7 471 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 KLHDC7AQ5VTJ3 777 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 TAF3Q5VWG9 929 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 INTS8Q75QN2 995 aaKnown RBP12.65□□□□□ -0.38
SKA3-203ENST00000400018 MFSD14AQ96MC6 490 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 LPIN3Q9BQK8 851 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 C2orf40Q9H1Z8 148 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 NXF1Q9UBU9 619 aaKnown RBP12.65□□□□□ -0.38
SKA3-203ENST00000400018 DNAJC12Q9UKB3 198 aa12.65□□□□□ -0.38
SKA3-203ENST00000400018 FOXN3O00409 490 aaPredicted RBP12.64□□□□□ -0.39
SKA3-203ENST00000400018 GNA14O95837 355 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 EN2P19622 333 aaPredicted RBP12.64□□□□□ -0.39
SKA3-203ENST00000400018 ITGB8P26012 769 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 LPIN1Q14693 890 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 GBP6Q6ZN66 633 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 PALB2Q86YC2 1186 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 C16orf45Q96MC5 204 aaPredicted RBP12.64□□□□□ -0.39
SKA3-203ENST00000400018 PAAF1Q9BRP4 392 aa12.64□□□□□ -0.39
SKA3-203ENST00000400018 ARHGAP20Q9P2F6 1191 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms