RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 SF3B1O75533 1304 aaKnown RBP eCLIP31.43■■■□□ 2.624e-8■■□□□ 13.3
HMGB1-205ENST00000399494 DOCK8Q8NF50 2099 aa31.42■■■□□ 2.62
HMGB1-205ENST00000399494 ANHXE9PGG2 379 aa31.42■■■□□ 2.62
HMGB1-205ENST00000399494 STK25O00506 426 aa31.42■■■□□ 2.62
HMGB1-205ENST00000399494 NAB2Q15742 525 aa31.42■■■□□ 2.62
HMGB1-205ENST00000399494 ZBTB8OSQ8IWT0 167 aa31.42■■■□□ 2.62
HMGB1-205ENST00000399494 BSNDQ8WZ55 320 aa31.42■■■□□ 2.62
HMGB1-205ENST00000399494 TTPALQ9BTX7 342 aa31.42■■■□□ 2.62
HMGB1-205ENST00000399494 CA14Q9ULX7 337 aa31.42■■■□□ 2.62
HMGB1-205ENST00000399494 CASTOR2A6NHX0 329 aa31.41■■■□□ 2.62
HMGB1-205ENST00000399494 N4BP3O15049 544 aa31.41■■■□□ 2.62
HMGB1-205ENST00000399494 THP07101 528 aa31.41■■■□□ 2.62
HMGB1-205ENST00000399494 LNX1Q8TBB1 728 aaPredicted RBP31.41■■■□□ 2.62
HMGB1-205ENST00000399494 HASPINQ8TF76 798 aa31.41■■■□□ 2.62
HMGB1-205ENST00000399494 PIK3R5Q8WYR1 880 aa31.41■■■□□ 2.62
HMGB1-205ENST00000399494 C2orf40Q9H1Z8 148 aa31.41■■■□□ 2.62
HMGB1-205ENST00000399494 USP20Q9Y2K6 914 aa31.41■■■□□ 2.62
HMGB1-205ENST00000399494 RIF1Q5UIP0 2472 aaKnown RBP31.4■■■□□ 2.62
HMGB1-205ENST00000399494 SYT1P21579 422 aa31.4■■■□□ 2.62
HMGB1-205ENST00000399494 PTGDRQ13258 359 aa31.4■■■□□ 2.62
HMGB1-205ENST00000399494 HTR4Q13639 388 aa31.4■■■□□ 2.62
HMGB1-205ENST00000399494 FAM171A1Q5VUB5 890 aa31.4■■■□□ 2.62
HMGB1-205ENST00000399494 GET4Q7L5D6 327 aaPredicted RBP31.4■■■□□ 2.62
HMGB1-205ENST00000399494 BRAPQ7Z569 592 aa31.4■■■□□ 2.62
HMGB1-205ENST00000399494 GPR152Q8TDT2 470 aa31.4■■■□□ 2.62
HMGB1-205ENST00000399494 FBXW11Q9UKB1 542 aa31.4■■■□□ 2.62
HMGB1-205ENST00000399494 KIF4AO95239 1232 aa31.39■■■□□ 2.62
HMGB1-205ENST00000399494 PRPF4BQ13523 1007 aaKnown RBP31.39■■■□□ 2.62
HMGB1-205ENST00000399494 PADI6Q6TGC4 694 aa31.39■■■□□ 2.62
HMGB1-205ENST00000399494 CEP57Q86XR8 500 aa31.39■■■□□ 2.62
HMGB1-205ENST00000399494 CCDC113Q9H0I3 377 aa31.39■■■□□ 2.62
HMGB1-205ENST00000399494 ACKR2O00590 384 aa31.38■■■□□ 2.61
HMGB1-205ENST00000399494 RECQL4O94761 1208 aa31.38■■■□□ 2.61
HMGB1-205ENST00000399494 EDN1P05305 212 aa31.38■■■□□ 2.61
HMGB1-205ENST00000399494 CYP11B2P19099 503 aa31.38■■■□□ 2.61
HMGB1-205ENST00000399494 RPA1P27694 616 aa31.38■■■□□ 2.61
HMGB1-205ENST00000399494 MAPK6Q16659 721 aa31.38■■■□□ 2.61
HMGB1-205ENST00000399494 GRASPQ7Z6J2 395 aaPredicted RBP31.38■■■□□ 2.61
HMGB1-205ENST00000399494 TBC1D17Q9HA65 648 aa31.38■■■□□ 2.61
HMGB1-205ENST00000399494 EIF4ENIF1Q9NRA8 985 aaKnown RBP31.38■■■□□ 2.61
HMGB1-205ENST00000399494 ZFP37Q9Y6Q3 630 aaPredicted RBP31.38■■■□□ 2.61
HMGB1-205ENST00000399494 LAD1O00515 517 aa31.37■■■□□ 2.61
HMGB1-205ENST00000399494 PRKCBP05771 671 aa31.37■■■□□ 2.61
HMGB1-205ENST00000399494 HNRNPA1P09651 372 aaKnown RBP eCLIP31.37■■■□□ 2.61
HMGB1-205ENST00000399494 FSHRP23945 695 aa31.37■■■□□ 2.61
HMGB1-205ENST00000399494 PSMD5Q16401 504 aa31.37■■■□□ 2.61
HMGB1-205ENST00000399494 PHLDB3Q6NSJ2 640 aa31.37■■■□□ 2.61
HMGB1-205ENST00000399494 ADSSL1Q8N142 457 aa31.37■■■□□ 2.61
HMGB1-205ENST00000399494 C4orf32Q8N8J7 132 aa31.37■■■□□ 2.61
HMGB1-205ENST00000399494 ST13P5Q8NFI4 369 aaPredicted RBP31.37■■■□□ 2.61
HMGB1-205ENST00000399494 ERMNQ8TAM6 284 aa31.37■■■□□ 2.61
HMGB1-205ENST00000399494 SLC2A4RGQ9NR83 387 aa31.37■■■□□ 2.61
HMGB1-205ENST00000399494 NUMBLQ9Y6R0 609 aa31.37■■■□□ 2.61
HMGB1-205ENST00000399494 ADAM12O43184 909 aa31.36■■■□□ 2.61
HMGB1-205ENST00000399494 NAMPTP43490 491 aa31.36■■■□□ 2.61
HMGB1-205ENST00000399494 TMEM132AQ24JP5 1023 aa31.36■■■□□ 2.61
HMGB1-205ENST00000399494 EEF1DP3Q658K8 133 aa31.36■■■□□ 2.61
HMGB1-205ENST00000399494 ADPGKQ9BRR6 497 aa31.36■■■□□ 2.61
HMGB1-205ENST00000399494 RPP25Q9BUL9 199 aaKnown RBP31.36■■■□□ 2.61
HMGB1-205ENST00000399494 RAB34Q9BZG1 259 aa31.36■■■□□ 2.61
HMGB1-205ENST00000399494 FAM186AA6NE01 2351 aa31.35■■■□□ 2.61
HMGB1-205ENST00000399494 RFX1P22670 979 aa31.35■■■□□ 2.61
HMGB1-205ENST00000399494 NTHL1P78549 312 aa31.35■■■□□ 2.61
HMGB1-205ENST00000399494 ELAVL2Q12926 359 aaKnown RBP31.35■■■□□ 2.61
HMGB1-205ENST00000399494 MYH15Q9Y2K3 1946 aa31.35■■■□□ 2.61
HMGB1-205ENST00000399494 SPTBN4Q9H254 2564 aa31.35■■■□□ 2.61
HMGB1-205ENST00000399494 ARHGEF35A5YM69 484 aa31.34■■■□□ 2.61
HMGB1-205ENST00000399494 LIG1P18858 919 aa31.34■■■□□ 2.61
HMGB1-205ENST00000399494 IGFBP6P24592 240 aaPredicted RBP31.34■■■□□ 2.61
HMGB1-205ENST00000399494 FXR2P51116 673 aaKnown RBP eCLIP31.34■■■□□ 2.61
HMGB1-205ENST00000399494 PPM1LQ5SGD2 360 aa31.34■■■□□ 2.61
HMGB1-205ENST00000399494 DEPTORQ8TB45 409 aa31.34■■■□□ 2.61
HMGB1-205ENST00000399494 POLD4Q9HCU8 107 aa31.34■■■□□ 2.61
HMGB1-205ENST00000399494 ARHGEF3Q9NR81 526 aa31.34■■■□□ 2.61
HMGB1-205ENST00000399494 DLGAP2Q9P1A6 1054 aa31.34■■■□□ 2.61
HMGB1-205ENST00000399494 CDH7Q9ULB5 785 aa31.34■■■□□ 2.61
HMGB1-205ENST00000399494 GDAQ9Y2T3 454 aa31.34■■■□□ 2.61
HMGB1-205ENST00000399494 SIT1Q9Y3P8 196 aa31.34■■■□□ 2.61
HMGB1-205ENST00000399494 DOCK6Q96HP0 2047 aa31.34■■■□□ 2.61
HMGB1-205ENST00000399494 STX6O43752 255 aa31.33■■■□□ 2.61
HMGB1-205ENST00000399494 C8AP07357 584 aa31.33■■■□□ 2.61
HMGB1-205ENST00000399494 HOXA9P31269 272 aa31.33■■■□□ 2.61
HMGB1-205ENST00000399494 PRPHP41219 470 aa31.33■■■□□ 2.61
HMGB1-205ENST00000399494 LIN9Q5TKA1 542 aa31.33■■■□□ 2.61
HMGB1-205ENST00000399494 PDXDC1Q6P996 788 aa31.33■■■□□ 2.61
HMGB1-205ENST00000399494 DCLRE1AQ6PJP8 1040 aa31.33■■■□□ 2.61
HMGB1-205ENST00000399494 PARM1Q6UWI2 310 aa31.33■■■□□ 2.61
HMGB1-205ENST00000399494 SPRYD3Q8NCJ5 442 aa31.33■■■□□ 2.61
HMGB1-205ENST00000399494 FGF14Q92915 247 aa31.33■■■□□ 2.61
HMGB1-205ENST00000399494 DCNP07585 359 aaKnown RBP31.32■■■□□ 2.6
HMGB1-205ENST00000399494 MUTP22033 750 aa31.32■■■□□ 2.6
HMGB1-205ENST00000399494 RAB33AQ14088 237 aa31.32■■■□□ 2.6
HMGB1-205ENST00000399494 PPP2R5AQ15172 486 aa31.32■■■□□ 2.6
HMGB1-205ENST00000399494 ECM1Q16610 540 aa31.32■■■□□ 2.6
HMGB1-205ENST00000399494 NT5DC1Q5TFE4 455 aa31.32■■■□□ 2.6
HMGB1-205ENST00000399494 HAUS3Q68CZ6 603 aa31.32■■■□□ 2.6
HMGB1-205ENST00000399494 DTHD1Q6ZMT9 781 aa31.32■■■□□ 2.6
HMGB1-205ENST00000399494 LRWD1Q9UFC0 647 aa31.32■■■□□ 2.6
HMGB1-205ENST00000399494 CCL16O15467 120 aa31.31■■■□□ 2.6
HMGB1-205ENST00000399494 FGFR3P22607 806 aa31.31■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms