RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 ZNF585AQ6P3V2 769 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 DPP8Q6V1X1 898 aaPredicted RBP4.78□□□□□ -1.64
HMGB1-204ENST00000399489 SPRED1Q7Z699 444 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.78□□□□□ -1.64
HMGB1-204ENST00000399489 GRAMD1CQ8IYS0 662 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 KIAA0319LQ8IZA0 1049 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 LSMEM1Q8N8F7 131 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 CHST14Q8NCH0 376 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 NUDT10Q8NFP7 164 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 IPO4Q8TEX9 1081 aaKnown RBP4.78□□□□□ -1.64
HMGB1-204ENST00000399489 JADE3Q92613 823 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 HDAC2Q92769 488 aaKnown RBP4.78□□□□□ -1.64
HMGB1-204ENST00000399489 NUDT11Q96G61 164 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 MAP3K14Q99558 947 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 TTLL2Q9BWV7 592 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 CERS4Q9HA82 394 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 CABP5Q9NP86 173 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 CCM2LQ9NUG4 571 aaPredicted RBP4.78□□□□□ -1.64
HMGB1-204ENST00000399489 H2AFY2Q9P0M6 372 aaPredicted RBP4.78□□□□□ -1.64
HMGB1-204ENST00000399489 B4GALT6Q9UBX8 382 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 ZFP69BQ9UJL9 534 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 DSEQ9UL01 958 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 ISY1Q9ULR0 285 aaKnown RBP4.78□□□□□ -1.64
HMGB1-204ENST00000399489 TMEM98Q9Y2Y6 226 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 CYR61O00622 381 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 TOR1BO14657 336 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 PLOD3O60568 738 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 MSCO60682 206 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 FZD7O75084 574 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 CKMP06732 381 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 POU2F2P09086 479 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 FAM200BP0CF97 657 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 COL6A2P12110 1019 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 VEGFAP15692 232 aaPredicted RBP4.77□□□□□ -1.65
HMGB1-204ENST00000399489 RPS6KB1P23443 525 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 SMARCA1P28370 1054 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 GALNSP34059 522 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 UBA7P41226 1012 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 PIK3CBP42338 1070 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 MECP2P51608 486 aaKnown RBP4.77□□□□□ -1.65
HMGB1-204ENST00000399489 HMGA2P52926 109 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 BLMHQ13867 455 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 SKIDA1Q1XH10 827 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 KIAA1614Q5VZ46 1190 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 DARS2Q6PI48 645 aaKnown RBP4.77□□□□□ -1.65
HMGB1-204ENST00000399489 PALM2Q8IXS6 379 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 NDUFAF2Q8N183 169 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 CLEC4DQ8WXI8 215 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 USP13Q92995 863 aaPredicted RBP4.77□□□□□ -1.65
HMGB1-204ENST00000399489 AJUBAQ96IF1 538 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 CDHR1Q96JP9 859 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 NUDT16L1Q9BRJ7 211 aaKnown RBP4.77□□□□□ -1.65
HMGB1-204ENST00000399489 B3GNT5Q9BYG0 378 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 SEZ6LQ9BYH1 1024 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 TOPORSQ9NS56 1045 aaPredicted RBP4.77□□□□□ -1.65
HMGB1-204ENST00000399489 PPARGC1AQ9UBK2 798 aaKnown RBP4.77□□□□□ -1.65
HMGB1-204ENST00000399489 ARVCFO00192 962 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 OAS2P29728 719 aaKnown RBP4.77□□□□□ -1.65
HMGB1-204ENST00000399489 HOXD12P35452 270 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 CASP5P51878 434 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 ICA1Q05084 483 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 TMEM177Q53S58 311 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 C4orf50Q6ZRC1 276 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 SNX32Q86XE0 403 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 PROSER1Q86XN7 944 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 DENND1CQ8IV53 801 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 MIER2Q8N344 545 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 CAMKK1Q8N5S9 505 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 DNERQ8NFT8 737 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 SLC30A5Q8TAD4 765 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 LMBR1Q8WVP7 490 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 NAF1Q96HR8 494 aaKnown RBP4.77□□□□□ -1.65
HMGB1-204ENST00000399489 RSRC1Q96IZ7 334 aaKnown RBP4.77□□□□□ -1.65
HMGB1-204ENST00000399489 SORCS2Q96PQ0 1159 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 LMF1Q96S06 567 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 CDIP1Q9H305 208 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 ATP6V0A4Q9HBG4 840 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 CD248Q9HCU0 757 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 VPS45Q9NRW7 570 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 ANKEF1Q9NU02 776 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 RBPJLQ9UBG7 517 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 L1RE1Q9UN81 338 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 COQ6Q9Y2Z9 468 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 PCDHA8Q9Y5H6 950 aa4.77□□□□□ -1.65
HMGB1-204ENST00000399489 EIF3FO00303 357 aaPredicted RBP4.76□□□□□ -1.65
HMGB1-204ENST00000399489 TGM5O43548 720 aa4.76□□□□□ -1.65
HMGB1-204ENST00000399489 NCK2O43639 380 aa4.76□□□□□ -1.65
HMGB1-204ENST00000399489 B3GALT2O43825 422 aa4.76□□□□□ -1.65
HMGB1-204ENST00000399489 CUTAO60888 179 aa4.76□□□□□ -1.65
HMGB1-204ENST00000399489 KLHL18O94889 574 aa4.76□□□□□ -1.65
HMGB1-204ENST00000399489 INMTO95050 263 aa4.76□□□□□ -1.65
HMGB1-204ENST00000399489 KNG1P01042 644 aa4.76□□□□□ -1.65
HMGB1-204ENST00000399489 DHRS4L1P0CG22 281 aa4.76□□□□□ -1.65
HMGB1-204ENST00000399489 NAT1P18440 290 aa4.76□□□□□ -1.65
HMGB1-204ENST00000399489 ADKP55263 362 aaKnown RBP4.76□□□□□ -1.65
HMGB1-204ENST00000399489 USP10Q14694 798 aaKnown RBP4.76□□□□□ -1.65
HMGB1-204ENST00000399489 KIF22Q14807 665 aa4.76□□□□□ -1.65
HMGB1-204ENST00000399489 ANO4Q32M45 955 aa4.76□□□□□ -1.65
HMGB1-204ENST00000399489 IZUMO3Q5VZ72 239 aa4.76□□□□□ -1.65
HMGB1-204ENST00000399489 KCNT2Q6UVM3 1135 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms