RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 CMASQ8NFW8 434 aaPredicted RBP11.4□□□□□ -0.58
NEDD8-202ENST00000396828 HASPINQ8TF76 798 aa11.4□□□□□ -0.58
NEDD8-202ENST00000396828 ACSF2Q96CM8 615 aaPredicted RBP11.4□□□□□ -0.58
NEDD8-202ENST00000396828 TRIM6Q9C030 488 aaPredicted RBP11.4□□□□□ -0.58
NEDD8-202ENST00000396828 WDR6Q9NNW5 1121 aaKnown RBP11.4□□□□□ -0.58
NEDD8-202ENST00000396828 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.4□□□□□ -0.58
NEDD8-202ENST00000396828 SNTG2Q9NY99 539 aa11.4□□□□□ -0.58
NEDD8-202ENST00000396828 PARP2Q9UGN5 583 aa11.4□□□□□ -0.58
NEDD8-202ENST00000396828 DUSP12Q9UNI6 340 aa11.4□□□□□ -0.58
NEDD8-202ENST00000396828 PCDHB6Q9Y5E3 794 aa11.4□□□□□ -0.58
NEDD8-202ENST00000396828 KRBA1A5PL33 1030 aa11.39□□□□□ -0.59
NEDD8-202ENST00000396828 CASTOR2A6NHX0 329 aa11.39□□□□□ -0.59
NEDD8-202ENST00000396828 ADAM12O43184 909 aa11.39□□□□□ -0.59
NEDD8-202ENST00000396828 CFHP08603 1231 aa11.39□□□□□ -0.59
NEDD8-202ENST00000396828 GBP2P32456 591 aaPredicted RBP11.39□□□□□ -0.59
NEDD8-202ENST00000396828 CLCN5P51795 746 aa11.39□□□□□ -0.59
NEDD8-202ENST00000396828 UBE2HP62256 183 aa11.39□□□□□ -0.59
NEDD8-202ENST00000396828 NCBP1Q09161 790 aaKnown RBP11.39□□□□□ -0.59
NEDD8-202ENST00000396828 NAB2Q15742 525 aa11.39□□□□□ -0.59
NEDD8-202ENST00000396828 SKOR2Q2VWA4 1001 aaPredicted RBP11.39□□□□□ -0.59
NEDD8-202ENST00000396828 EEF1DP3Q658K8 133 aa11.39□□□□□ -0.59
NEDD8-202ENST00000396828 CDCA2Q69YH5 1023 aaPredicted RBP11.39□□□□□ -0.59
NEDD8-202ENST00000396828 SIX5Q8N196 739 aa11.39□□□□□ -0.59
NEDD8-202ENST00000396828 RIN2Q8WYP3 895 aaPredicted RBP11.39□□□□□ -0.59
NEDD8-202ENST00000396828 SMG7Q92540 1137 aaKnown RBP11.39□□□□□ -0.59
NEDD8-202ENST00000396828 RPP25Q9BUL9 199 aaKnown RBP11.39□□□□□ -0.59
NEDD8-202ENST00000396828 KIFC3Q9BVG8 833 aa11.39□□□□□ -0.59
NEDD8-202ENST00000396828 COLEC11Q9BWP8 271 aa11.39□□□□□ -0.59
NEDD8-202ENST00000396828 NT5C3AQ9H0P0 336 aa11.39□□□□□ -0.59
NEDD8-202ENST00000396828 MFSD1Q9H3U5 465 aa11.39□□□□□ -0.59
NEDD8-202ENST00000396828 FZD8Q9H461 694 aa11.39□□□□□ -0.59
NEDD8-202ENST00000396828 PDZD7Q9H5P4 517 aa11.39□□□□□ -0.59
NEDD8-202ENST00000396828 LMBRD1Q9NUN5 540 aa11.39□□□□□ -0.59
NEDD8-202ENST00000396828 STK39Q9UEW8 545 aa11.39□□□□□ -0.59
NEDD8-202ENST00000396828 ADAM28Q9UKQ2 775 aa11.39□□□□□ -0.59
NEDD8-202ENST00000396828 COL4A3Q01955 1670 aa11.39□□□□□ -0.59
NEDD8-202ENST00000396828 VWA8A3KMH1 1905 aa11.39□□□□□ -0.59
NEDD8-202ENST00000396828 PTPRZ1P23471 2315 aaPredicted RBP11.38□□□□□ -0.59
NEDD8-202ENST00000396828 CLUHO75153 1309 aa11.38□□□□□ -0.59
NEDD8-202ENST00000396828 PROB1E7EW31 1015 aa11.38□□□□□ -0.59
NEDD8-202ENST00000396828 KIF4AO95239 1232 aa11.38□□□□□ -0.59
NEDD8-202ENST00000396828 PAPLNO95428 1278 aa11.38□□□□□ -0.59
NEDD8-202ENST00000396828 MBD3O95983 291 aa11.38□□□□□ -0.59
NEDD8-202ENST00000396828 XRCC6P12956 609 aaKnown RBP eCLIP11.38□□□□□ -0.59
NEDD8-202ENST00000396828 AOC1P19801 751 aa11.38□□□□□ -0.59
NEDD8-202ENST00000396828 NBL1P41271 181 aa11.38□□□□□ -0.59
NEDD8-202ENST00000396828 NTHL1P78549 312 aa11.38□□□□□ -0.59
NEDD8-202ENST00000396828 GRIK3Q13003 919 aa11.38□□□□□ -0.59
NEDD8-202ENST00000396828 PTGDRQ13258 359 aa11.38□□□□□ -0.59
NEDD8-202ENST00000396828 HSP90AA2PQ14568 343 aaPredicted RBP11.38□□□□□ -0.59
NEDD8-202ENST00000396828 PTPAQ15257 358 aa11.38□□□□□ -0.59
NEDD8-202ENST00000396828 USP41Q3LFD5 358 aa11.38□□□□□ -0.59
NEDD8-202ENST00000396828 PADI6Q6TGC4 694 aa11.38□□□□□ -0.59
NEDD8-202ENST00000396828 FRMD5Q7Z6J6 570 aa11.38□□□□□ -0.59
NEDD8-202ENST00000396828 SLC44A3Q8N4M1 653 aa11.38□□□□□ -0.59
NEDD8-202ENST00000396828 CCDC43Q96MW1 224 aaKnown RBP11.38□□□□□ -0.59
NEDD8-202ENST00000396828 CLSTN3Q9BQT9 956 aa11.38□□□□□ -0.59
NEDD8-202ENST00000396828 CCDC113Q9H0I3 377 aa11.38□□□□□ -0.59
NEDD8-202ENST00000396828 SSX2IPQ9Y2D8 614 aa11.38□□□□□ -0.59
NEDD8-202ENST00000396828 MORC2Q9Y6X9 1032 aaPredicted RBP11.38□□□□□ -0.59
NEDD8-202ENST00000396828 TCHHQ07283 1943 aa11.38□□□□□ -0.59
NEDD8-202ENST00000396828 TRIP11Q15643 1979 aa11.37□□□□□ -0.59
NEDD8-202ENST00000396828 PRR23AA6NEV1 266 aa11.37□□□□□ -0.59
NEDD8-202ENST00000396828 CUTAO60888 179 aa11.37□□□□□ -0.59
NEDD8-202ENST00000396828 NR1I2O75469 434 aa11.37□□□□□ -0.59
NEDD8-202ENST00000396828 TADA2AO75478 443 aa11.37□□□□□ -0.59
NEDD8-202ENST00000396828 RECQL4O94761 1208 aa11.37□□□□□ -0.59
NEDD8-202ENST00000396828 LIG1P18858 919 aa11.37□□□□□ -0.59
NEDD8-202ENST00000396828 MARCKSP29966 332 aaPredicted RBP11.37□□□□□ -0.59
NEDD8-202ENST00000396828 NUBP1P53384 320 aa11.37□□□□□ -0.59
NEDD8-202ENST00000396828 ATP2C1P98194 919 aaPredicted RBP11.37□□□□□ -0.59
NEDD8-202ENST00000396828 TUSC3Q13454 348 aa11.37□□□□□ -0.59
NEDD8-202ENST00000396828 FAM187BQ17R55 369 aa11.37□□□□□ -0.59
NEDD8-202ENST00000396828 ARL6IP4Q66PJ3 421 aaKnown RBP11.37□□□□□ -0.59
NEDD8-202ENST00000396828 ADALQ6DHV7 355 aa11.37□□□□□ -0.59
NEDD8-202ENST00000396828 GET4Q7L5D6 327 aaPredicted RBP11.37□□□□□ -0.59
NEDD8-202ENST00000396828 C4orf32Q8N8J7 132 aa11.37□□□□□ -0.59
NEDD8-202ENST00000396828 KRI1Q8N9T8 703 aaKnown RBP11.37□□□□□ -0.59
NEDD8-202ENST00000396828 LNX1Q8TBB1 728 aaPredicted RBP11.37□□□□□ -0.59
NEDD8-202ENST00000396828 POLR3CQ9BUI4 534 aaPredicted RBP11.37□□□□□ -0.59
NEDD8-202ENST00000396828 RHOBTB2Q9BYZ6 727 aa11.37□□□□□ -0.59
NEDD8-202ENST00000396828 PRKD2Q9BZL6 878 aa11.37□□□□□ -0.59
NEDD8-202ENST00000396828 TUFT1Q9NNX1 390 aa11.37□□□□□ -0.59
NEDD8-202ENST00000396828 PRMT7Q9NVM4 692 aaPredicted RBP11.37□□□□□ -0.59
NEDD8-202ENST00000396828 FNIP2Q9P278 1114 aa11.37□□□□□ -0.59
NEDD8-202ENST00000396828 IGSF9Q9P2J2 1179 aa11.37□□□□□ -0.59
NEDD8-202ENST00000396828 EPS15L1Q9UBC2 864 aa11.37□□□□□ -0.59
NEDD8-202ENST00000396828 CA14Q9ULX7 337 aa11.37□□□□□ -0.59
NEDD8-202ENST00000396828 PCDHA7Q9UN72 937 aa11.37□□□□□ -0.59
NEDD8-202ENST00000396828 NOTCH4Q99466 2003 aa11.36□□□□□ -0.59
NEDD8-202ENST00000396828 GVINP1Q7Z2Y8 2422 aa11.36□□□□□ -0.59
NEDD8-202ENST00000396828 ZMYND10O75800 440 aa11.36□□□□□ -0.59
NEDD8-202ENST00000396828 OR52Z1P0C646 297 aa11.36□□□□□ -0.59
NEDD8-202ENST00000396828 LAMP2P13473 410 aa11.36□□□□□ -0.59
NEDD8-202ENST00000396828 CYP11B2P19099 503 aa11.36□□□□□ -0.59
NEDD8-202ENST00000396828 RPA1P27694 616 aa11.36□□□□□ -0.59
NEDD8-202ENST00000396828 PRPHP41219 470 aa11.36□□□□□ -0.59
NEDD8-202ENST00000396828 PRPF4BQ13523 1007 aaKnown RBP11.36□□□□□ -0.59
NEDD8-202ENST00000396828 GLRA4Q5JXX5 417 aa11.36□□□□□ -0.59
NEDD8-202ENST00000396828 NT5DC1Q5TFE4 455 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms