RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 SEPT12Q8IYM1 358 aa13.59□□□□□ -0.23
SHMT1-205ENST00000395684 GIMAP7Q8NHV1 300 aa13.59□□□□□ -0.23
SHMT1-205ENST00000395684 IL31RAQ8NI17 732 aa13.59□□□□□ -0.23
SHMT1-205ENST00000395684 DYDC1Q8WWB3 177 aa13.59□□□□□ -0.23
SHMT1-205ENST00000395684 SAAL1Q96ER3 474 aa13.59□□□□□ -0.23
SHMT1-205ENST00000395684 MASTLQ96GX5 879 aa13.59□□□□□ -0.23
SHMT1-205ENST00000395684 SERPINB12Q96P63 405 aa13.59□□□□□ -0.23
SHMT1-205ENST00000395684 TACO1Q9BSH4 297 aaKnown RBP13.59□□□□□ -0.23
SHMT1-205ENST00000395684 NSRP1Q9H0G5 558 aaKnown RBP13.59□□□□□ -0.23
SHMT1-205ENST00000395684 COL20A1Q9P218 1284 aa13.59□□□□□ -0.23
SHMT1-205ENST00000395684 ASIC3Q9UHC3 531 aa13.59□□□□□ -0.23
SHMT1-205ENST00000395684 SNRNP35Q16560 246 aaKnown RBP13.59□□□□□ -0.23
SHMT1-205ENST00000395684 KYNUQ16719 465 aa13.59□□□□□ -0.23
SHMT1-205ENST00000395684 PNMA8AQ86V59 439 aaPredicted RBP13.59□□□□□ -0.23
SHMT1-205ENST00000395684 CHURC1Q8WUH1 139 aa13.59□□□□□ -0.23
SHMT1-205ENST00000395684 TBC1D31Q96DN5 1066 aa13.59□□□□□ -0.23
SHMT1-205ENST00000395684 PWWP2AQ96N64 755 aa13.59□□□□□ -0.23
SHMT1-205ENST00000395684 USP15Q9Y4E8 981 aaPredicted RBP13.59□□□□□ -0.23
SHMT1-205ENST00000395684 GH1P01241 217 aa13.58□□□□□ -0.23
SHMT1-205ENST00000395684 ITIH2P19823 946 aa13.58□□□□□ -0.23
SHMT1-205ENST00000395684 SLC8A1P32418 973 aa13.58□□□□□ -0.23
SHMT1-205ENST00000395684 ELF1P32519 619 aa13.58□□□□□ -0.23
SHMT1-205ENST00000395684 KCNJ2P63252 427 aa13.58□□□□□ -0.23
SHMT1-205ENST00000395684 KRT39Q6A163 491 aa13.58□□□□□ -0.23
SHMT1-205ENST00000395684 ACAD10Q6JQN1 1059 aa13.58□□□□□ -0.23
SHMT1-205ENST00000395684 TAS1R2Q8TE23 839 aa13.58□□□□□ -0.23
SHMT1-205ENST00000395684 PARD3BQ8TEW8 1205 aa13.58□□□□□ -0.23
SHMT1-205ENST00000395684 TOPORSQ9NS56 1045 aaPredicted RBP13.58□□□□□ -0.23
SHMT1-205ENST00000395684 ZNF219Q9P2Y4 722 aaPredicted RBP13.58□□□□□ -0.23
SHMT1-205ENST00000395684 SLX4Q8IY92 1834 aa13.58□□□□□ -0.24
SHMT1-205ENST00000395684 TCP10L2B9ZVM9 353 aa13.58□□□□□ -0.24
SHMT1-205ENST00000395684 TTC4O95801 387 aa13.58□□□□□ -0.24
SHMT1-205ENST00000395684 EZRP15311 586 aaKnown RBP13.58□□□□□ -0.24
SHMT1-205ENST00000395684 NF2P35240 595 aa13.58□□□□□ -0.24
SHMT1-205ENST00000395684 PDE6BP35913 854 aa13.58□□□□□ -0.24
SHMT1-205ENST00000395684 ITGA8P53708 1063 aa13.58□□□□□ -0.24
SHMT1-205ENST00000395684 MCCD1P59942 119 aaPredicted RBP13.58□□□□□ -0.24
SHMT1-205ENST00000395684 GALNTL6Q49A17 601 aa13.58□□□□□ -0.24
SHMT1-205ENST00000395684 CC2D2BQ6DHV5 1058 aa13.58□□□□□ -0.24
SHMT1-205ENST00000395684 CYP4X1Q8N118 509 aa13.58□□□□□ -0.24
SHMT1-205ENST00000395684 ANKRD42Q8N9B4 389 aa13.58□□□□□ -0.24
SHMT1-205ENST00000395684 AGBL1Q96MI9 1066 aa13.58□□□□□ -0.24
SHMT1-205ENST00000395684 ST6GALNAC4Q9H4F1 302 aa13.58□□□□□ -0.24
SHMT1-205ENST00000395684 ANAPC7Q9UJX3 599 aa13.58□□□□□ -0.24
SHMT1-205ENST00000395684 COQ4Q9Y3A0 265 aa13.58□□□□□ -0.24
SHMT1-205ENST00000395684 YWHABP31946 246 aaKnown RBP13.57□□□□□ -0.24
SHMT1-205ENST00000395684 QARSP47897 775 aaKnown RBP13.57□□□□□ -0.24
SHMT1-205ENST00000395684 NCALDP61601 193 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 UGCGQ16739 394 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 NUGGCQ68CJ6 796 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 PHLDB2Q86SQ0 1253 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 N4BP2L2Q92802 583 aaPredicted RBP13.57□□□□□ -0.24
SHMT1-205ENST00000395684 KIFC3Q9BVG8 833 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 KCNK9Q9NPC2 374 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 HERC5Q9UII4 1024 aaKnown RBP13.57□□□□□ -0.24
SHMT1-205ENST00000395684 R3HDM2Q9Y2K5 976 aaKnown RBP13.57□□□□□ -0.24
SHMT1-205ENST00000395684 CETPP11597 493 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 MAPK4P31152 587 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 GPC3P51654 580 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 NCKAP1LP55160 1127 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 ACCSLQ4AC99 568 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 DAB2IPQ5VWQ8 1189 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 SNF8Q96H20 258 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 GLIS2Q9BZE0 524 aaPredicted RBP13.57□□□□□ -0.24
SHMT1-205ENST00000395684 CFAP73A6NFT4 308 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 ONECUT3O60422 494 aaPredicted RBP13.57□□□□□ -0.24
SHMT1-205ENST00000395684 SCP2P22307 547 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 HSD17B4P51659 736 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 RIPK1Q13546 671 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 PTK6Q13882 451 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 ZNF268Q14587 947 aaPredicted RBP13.57□□□□□ -0.24
SHMT1-205ENST00000395684 CLEC16AQ2KHT3 1053 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 LLGL2Q6P1M3 1020 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 TLDC1Q6P9B6 456 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 NLGN1Q8N2Q7 840 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 GDAP1Q8TB36 358 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 CKAP2Q8WWK9 683 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 FAM84AQ96KN4 292 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 AGO4Q9HCK5 861 aaKnown RBP13.57□□□□□ -0.24
SHMT1-205ENST00000395684 TMEM8AQ9HCN3 771 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 RAB20Q9NX57 234 aa13.57□□□□□ -0.24
SHMT1-205ENST00000395684 MROH7Q68CQ1 1323 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 NFIBO00712 420 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 BRAFP15056 766 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 NQO1P15559 274 aaKnown RBP13.56□□□□□ -0.24
SHMT1-205ENST00000395684 CNGA1P29973 690 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 VPS41P49754 854 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 AOC3Q16853 763 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 TKFCQ3LXA3 575 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 C2CD6Q53TS8 623 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 SEPT14Q6ZU15 432 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 FBXL13Q8NEE6 735 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 NT5C1BQ96P26 610 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 PLVAPQ9BX97 442 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 DCLK3Q9C098 648 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 ECT2Q9H8V3 914 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 TBX20Q9UMR3 447 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 L3MBTL1Q9Y468 752 aa13.56□□□□□ -0.24
SHMT1-205ENST00000395684 ASTN2O75129 1339 aaPredicted RBP13.56□□□□□ -0.24
SHMT1-205ENST00000395684 CLRN2A0PK11 232 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms