RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.93□□□□□ -0.54e-6■■■■□ 23.2
CUX1-204ENST00000393824 BCAS3Q9H6U6 928 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 ZDHHC18Q9NUE0 388 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 MSH4O15457 936 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 RGS16O15492 202 aaPredicted RBP11.93□□□□□ -0.5
CUX1-204ENST00000393824 RGS20O76081 388 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 SUN1O94901 812 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 FOSP01100 380 aaPredicted RBP11.93□□□□□ -0.5
CUX1-204ENST00000393824 GNAZP19086 355 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 OSBPP22059 807 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 POLR2FP61218 127 aaKnown RBP11.93□□□□□ -0.5
CUX1-204ENST00000393824 KLHL30Q0D2K2 578 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 PGM5Q15124 567 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 CALCRLQ16602 461 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 SGSM1Q2NKQ1 1148 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 ZCWPW2Q504Y3 356 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 ANO7Q6IWH7 933 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 MTHFD1LQ6UB35 978 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 MCF2L2Q86YR7 1114 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 RAD54LQ92698 747 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 CDK5RAP3Q96JB5 506 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 FGD4Q96M96 766 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 PDCD2LQ9BRP1 358 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 WDR11Q9BZH6 1224 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 PXMP2Q9NR77 195 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 PKD2L1Q9P0L9 805 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 SUCLA2Q9P2R7 463 aaPredicted RBP11.93□□□□□ -0.5
CUX1-204ENST00000393824 CPA4Q9UI42 421 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 STXBP5LQ9Y2K9 1186 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 RABGAP1Q9Y3P9 1069 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 TELO2Q9Y4R8 837 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 ASB3Q9Y575 518 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 BZW2Q9Y6E2 419 aaKnown RBP11.93□□□□□ -0.5
CUX1-204ENST00000393824 LRRD1A4D1F6 860 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 A8MUI8 341 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 SLC26A4O43511 780 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 GJB6O95452 261 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 CCNB1P14635 433 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 CNGA1P29973 690 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 CIITAP33076 1130 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 PMS2P54278 862 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 DRG2P55039 364 aaKnown RBP11.92□□□□□ -0.5
CUX1-204ENST00000393824 PPP2R5EQ16537 467 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 WDR78Q5VTH9 848 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 DUPD1Q68J44 220 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 MYOCDQ8IZQ8 938 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 ANKRD35Q8N283 1001 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 PNMA5Q96PV4 448 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 FAM167BQ9BTA0 163 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 SMIM24O75264 130 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 CYP3A4P08684 503 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 MYCLP12524 364 aaPredicted RBP11.92□□□□□ -0.5
CUX1-204ENST00000393824 IFI35P80217 286 aaPredicted RBP11.92□□□□□ -0.5
CUX1-204ENST00000393824 CNGA2Q16280 664 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 TMEM119Q4V9L6 283 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 DENND2CQ68D51 928 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 IFNL1Q8IU54 200 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 TPCN2Q8NHX9 752 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 RNF25Q96BH1 459 aaPredicted RBP11.92□□□□□ -0.5
CUX1-204ENST00000393824 CELF4Q9BZC1 486 aaKnown RBP11.92□□□□□ -0.5
CUX1-204ENST00000393824 STMN4Q9H169 189 aaPredicted RBP11.92□□□□□ -0.5
CUX1-204ENST00000393824 DPH5Q9H2P9 285 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 RXFP1Q9HBX9 757 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 FRMPD4Q14CM0 1322 aa11.92□□□□□ -0.5
CUX1-204ENST00000393824 SOWAHBA6NEL2 793 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 HIP1RO75146 1068 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 GNAT1P11488 350 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 CAP1Q01518 475 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 SPIRE1Q08AE8 756 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 PABPC4Q13310 644 aaKnown RBP eCLIP11.91□□□□□ -0.53e-25■■■■■ 66.3
CUX1-204ENST00000393824 ECM1Q16610 540 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 CEP55Q53EZ4 464 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 ZC3H3Q8IXZ2 948 aaKnown RBP11.91□□□□□ -0.5
CUX1-204ENST00000393824 KIF2BQ8N4N8 673 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 ERP44Q9BS26 406 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 LSM14BQ9BX40 385 aaKnown RBP11.91□□□□□ -0.5
CUX1-204ENST00000393824 AZI2Q9H6S1 392 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 CHCHD3Q9NX63 227 aaKnown RBP11.91□□□□□ -0.5
CUX1-204ENST00000393824 CTNNAL1Q9UBT7 734 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 ATP9AO75110 1047 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 GBP1P32455 592 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 PTENP60484 403 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 SF3A3Q12874 501 aaKnown RBP eCLIP11.91□□□□□ -0.5
CUX1-204ENST00000393824 RAPGEF1Q13905 1077 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 ASIC2Q16515 512 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 GNPTABQ3T906 1256 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 Q4G0T1 1027 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 PEX26Q7Z412 305 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 TRIM59Q8IWR1 403 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 LMNTD2Q8IXW0 634 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 CHST13Q8NET6 341 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 GOLPH3Q9H4A6 298 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 SUDS3Q9H7L9 328 aaPredicted RBP11.91□□□□□ -0.5
CUX1-204ENST00000393824 PRKAG3Q9UGI9 489 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 PNMA3Q9UL41 463 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 STK38LQ9Y2H1 464 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 SLC45A1Q9Y2W3 748 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 ARL2BPQ9Y2Y0 163 aa11.91□□□□□ -0.5
CUX1-204ENST00000393824 ADGRA2Q96PE1 1338 aa11.9□□□□□ -0.5
CUX1-204ENST00000393824 A0A0A6YYK5 440 aaPredicted RBP11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms