RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 TOM1L2Q6ZVM7 507 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 FICDQ9BVA6 458 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 AP1M1Q9BXS5 423 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 RABL2AQ9UBK7 228 aaPredicted RBP9.18□□□□□ -0.94
LIG3-202ENST00000378526 PCDHB15Q9Y5E8 787 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 PHF20L1A8MW92 1017 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 SSNA1O43805 119 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 GYS1P13807 737 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 CALB2P22676 271 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 BPIFA3Q9BQP9 254 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 CINPQ9BW66 212 aaPredicted RBP9.18□□□□□ -0.94
LIG3-202ENST00000378526 PHGDHO43175 533 aaKnown RBP9.17□□□□□ -0.94
LIG3-202ENST00000378526 LIG4P49917 911 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 FKBP3Q00688 224 aaKnown RBP9.17□□□□□ -0.94
LIG3-202ENST00000378526 KRT33BQ14525 404 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 CDC73Q6P1J9 531 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 CHST3Q7LGC8 479 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 AP3S1Q92572 193 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 NUDT12Q9BQG2 462 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 ENTPD7Q9NQZ7 604 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 ZNF624Q9P2J8 865 aaPredicted RBP9.17□□□□□ -0.94
LIG3-202ENST00000378526 RGS12O14924 1447 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 RRM2P31350 389 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 SEMA3FQ13275 785 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 ITGADQ13349 1161 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 ZFP69Q49AA0 526 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 IRGCQ6NXR0 463 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 SCUBE1Q8IWY4 988 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 ARL8AQ96BM9 186 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 CITED4Q96RK1 184 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 CHCHD6Q9BRQ6 235 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 CDK19Q9BWU1 502 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 FSD1LQ9BXM9 530 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 ROPN1BQ9BZX4 212 aaPredicted RBP9.17□□□□□ -0.94
LIG3-202ENST00000378526 BLZF1Q9H2G9 400 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 ROPN1Q9HAT0 212 aaPredicted RBP9.17□□□□□ -0.94
LIG3-202ENST00000378526 SERTAD1Q9UHV2 236 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 TRIM43BA6NCK2 446 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 M0QZ92 97 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 CHN1P15882 459 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 NRG3P56975 720 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 DLG4P78352 724 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 MZT2AQ6P582 158 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 CHCHD4Q8N4Q1 142 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 ZNF713Q8N859 430 aaPredicted RBP9.17□□□□□ -0.94
LIG3-202ENST00000378526 CALN1Q9BXU9 219 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 DYRK4Q9NR20 520 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 RUVBL2Q9Y230 463 aaKnown RBP9.17□□□□□ -0.94
LIG3-202ENST00000378526 MICAL3Q7RTP6 2002 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 TMOD1P28289 359 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 STX4Q12846 297 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 LBRQ14739 615 aaKnown RBP9.17□□□□□ -0.94
LIG3-202ENST00000378526 QPRTQ15274 297 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 ULK3Q6PHR2 472 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 EIF3MQ7L2H7 374 aaKnown RBP9.17□□□□□ -0.94
LIG3-202ENST00000378526 PLEKHA5Q9HAU0 1116 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 TMOD3Q9NYL9 352 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 KDRP35968 1356 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 CCNA2P20248 432 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 RASA1P20936 1047 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 HADHAP40939 763 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 CAPZA2P47755 286 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 KCNJ6P48051 423 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 ARHGEF19Q8IW93 802 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 ANKRD7Q92527 254 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 TMEM79Q9BSE2 394 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 SH3BP4Q9P0V3 963 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 MGAT4AQ9UM21 535 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 GAP43P17677 238 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 PSME3P61289 254 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 MAPK11Q15759 364 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 NAALADL2Q58DX5 795 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 E4F1Q66K89 784 aaPredicted RBP9.17□□□□□ -0.94
LIG3-202ENST00000378526 NUP93Q8N1F7 819 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 SYMPKQ92797 1274 aaKnown RBP9.17□□□□□ -0.94
LIG3-202ENST00000378526 WNT8AQ9H1J5 351 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 AKAP7Q9P0M2 348 aaPredicted RBP9.17□□□□□ -0.94
LIG3-202ENST00000378526 C15orf41Q9Y2V0 281 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 TPRKBQ9Y3C4 175 aa9.17□□□□□ -0.94
LIG3-202ENST00000378526 SMNDC1O75940 238 aaKnown RBP eCLIP9.16□□□□□ -0.94
LIG3-202ENST00000378526 KRT36O76013 467 aa9.16□□□□□ -0.94
LIG3-202ENST00000378526 NDUFA8P51970 172 aa9.16□□□□□ -0.94
LIG3-202ENST00000378526 NR1D2Q14995 579 aa9.16□□□□□ -0.94
LIG3-202ENST00000378526 PTPROQ16827 1216 aa9.16□□□□□ -0.94
LIG3-202ENST00000378526 C1orf228Q6PIY5 440 aa9.16□□□□□ -0.94
LIG3-202ENST00000378526 MTHFD1LQ6UB35 978 aa9.16□□□□□ -0.94
LIG3-202ENST00000378526 NELFCDQ8IXH7 590 aa9.16□□□□□ -0.94
LIG3-202ENST00000378526 MAGEB6Q8N7X4 407 aa9.16□□□□□ -0.94
LIG3-202ENST00000378526 FAM172AQ8WUF8 416 aa9.16□□□□□ -0.94
LIG3-202ENST00000378526 CYLDQ9NQC7 956 aa9.16□□□□□ -0.94
LIG3-202ENST00000378526 DDX18Q9NVP1 670 aaKnown RBP9.16□□□□□ -0.94
LIG3-202ENST00000378526 ATP8B3O60423 1300 aa9.16□□□□□ -0.94
LIG3-202ENST00000378526 FTCDO95954 541 aa9.16□□□□□ -0.94
LIG3-202ENST00000378526 IST1P53990 364 aa9.16□□□□□ -0.94
LIG3-202ENST00000378526 RAD23AP54725 363 aa9.16□□□□□ -0.94
LIG3-202ENST00000378526 VSNL1P62760 191 aa9.16□□□□□ -0.94
LIG3-202ENST00000378526 NEK5Q6P3R8 708 aa9.16□□□□□ -0.94
LIG3-202ENST00000378526 PADI6Q6TGC4 694 aa9.16□□□□□ -0.94
LIG3-202ENST00000378526 PJA1Q8NG27 643 aa9.16□□□□□ -0.94
LIG3-202ENST00000378526 MCM9Q9NXL9 1143 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms