RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 ANO4Q32M45 955 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 ZBTB38Q8NAP3 1195 aaPredicted RBP12.23□□□□□ -0.45
VPS13A-205ENST00000376636 CABLES1Q8TDN4 633 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 MTO1Q9Y2Z2 717 aaKnown RBP12.23□□□□□ -0.45
VPS13A-205ENST00000376636 GMEB1Q9Y692 573 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 TBKBP1A7MCY6 615 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 PLA2G4BP0C869 781 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 CUL4AQ13619 759 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 ZNF235Q14590 738 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 CCDC60Q8IWA6 550 aaPredicted RBP12.23□□□□□ -0.45
VPS13A-205ENST00000376636 TUFT1Q9NNX1 390 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 PSMD3O43242 534 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 PDE9AO76083 593 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 AGTP01019 485 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 MYL2P10916 166 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 RHOT1Q8IXI2 618 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 AGR3Q8TD06 166 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 TTC7AQ9ULT0 858 aaPredicted RBP12.23□□□□□ -0.45
VPS13A-205ENST00000376636 AKAP5P24588 427 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 RRM2P31350 389 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 TRIQKQ629K1 86 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 MDM1Q8TC05 714 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 IL17RAQ96F46 866 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 TNRQ92752 1358 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 CTTNQ14247 550 aaKnown RBP12.23□□□□□ -0.45
VPS13A-205ENST00000376636 SDR42E1Q8WUS8 393 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 PARVAQ9NVD7 372 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 NMRK1Q9NWW6 199 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 COPB2P35606 906 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 BYSLQ13895 437 aaKnown RBP12.23□□□□□ -0.45
VPS13A-205ENST00000376636 CYFIP2Q96F07 1278 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 CLDN3O15551 220 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 PEX1O43933 1283 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 CCDC81Q6ZN84 652 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 LONP2Q86WA8 852 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 SNX24Q9Y343 169 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 ENO3P13929 434 aaPredicted RBP12.23□□□□□ -0.45
VPS13A-205ENST00000376636 ADD1P35611 737 aaKnown RBP12.23□□□□□ -0.45
VPS13A-205ENST00000376636 VHLP40337 213 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 SNX30Q5VWJ9 437 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 TBCKQ8TEA7 893 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 SGSM3Q96HU1 749 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 RNPEPQ9H4A4 650 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 CACNA2D2Q9NY47 1150 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 CTNNAL1Q9UBT7 734 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 KRT20P35900 424 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 MTFR1Q15390 333 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 MCRS1Q96EZ8 462 aa12.23□□□□□ -0.45
VPS13A-205ENST00000376636 RMND5BQ96G75 393 aaPredicted RBP12.23□□□□□ -0.45
VPS13A-205ENST00000376636 FGAP02671 866 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 MAPKAPK2P49137 400 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 TRIP10Q15642 601 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 ACCSLQ4AC99 568 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 PDXDC2PQ6P474 469 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 GALNT4Q8N4A0 578 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 PPP1R36Q96LQ0 422 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 SF3B1O75533 1304 aaKnown RBP eCLIP12.22□□□□□ -0.454e-6■■■■■ 80.4
VPS13A-205ENST00000376636 CDH16O75309 829 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 FYNP06241 537 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 BCAR1P56945 870 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 TSPYL6Q8N831 410 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 EXD1Q8NHP7 514 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 OTUD7AQ8TE49 926 aaPredicted RBP12.22□□□□□ -0.45
VPS13A-205ENST00000376636 DFFAO00273 331 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 KCNK10P57789 538 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 OR8H2Q8N162 312 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 PSMC3IPQ9P2W1 217 aaPredicted RBP12.22□□□□□ -0.45
VPS13A-205ENST00000376636 SERPINB13Q9UIV8 391 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 BPIFA3Q9BQP9 254 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 THTPAQ9BU02 230 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 TRPC7Q9HCX4 862 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 POLIQ9UNA4 740 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 DENND4BO75064 1496 aaPredicted RBP12.22□□□□□ -0.45
VPS13A-205ENST00000376636 ECDO95905 644 aaPredicted RBP12.22□□□□□ -0.45
VPS13A-205ENST00000376636 CCT8P50990 548 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 ENOSF1Q7L5Y1 443 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 MLPHQ9BV36 600 aaPredicted RBP12.22□□□□□ -0.45
VPS13A-205ENST00000376636 SH3GLB2Q9NR46 395 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 IARS2Q9NSE4 1012 aaKnown RBP12.22□□□□□ -0.45
VPS13A-205ENST00000376636 RIC8BQ9NVN3 520 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 PRAG1Q86YV5 1406 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 EIF4E1BA6NMX2 242 aaKnown RBP12.22□□□□□ -0.45
VPS13A-205ENST00000376636 CYP2C19P33261 490 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 TMEM270Q6UE05 265 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 FLAD1Q8NFF5 587 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 FAM47DPA6NHR8 397 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 OSTNP61366 133 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 C11orf57Q6ZUT1 292 aaPredicted RBP12.22□□□□□ -0.45
VPS13A-205ENST00000376636 KDM5DQ9BY66 1539 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 XPO1O14980 1071 aaKnown RBP12.22□□□□□ -0.45
VPS13A-205ENST00000376636 FAM167AQ96KS9 214 aa12.22□□□□□ -0.45
VPS13A-205ENST00000376636 DPYSL4O14531 572 aa12.21□□□□□ -0.45
VPS13A-205ENST00000376636 PDZK1Q5T2W1 519 aa12.21□□□□□ -0.45
VPS13A-205ENST00000376636 TRIM65Q6PJ69 517 aa12.21□□□□□ -0.45
VPS13A-205ENST00000376636 PGBD4Q96DM1 585 aa12.21□□□□□ -0.45
VPS13A-205ENST00000376636 PALD1Q9ULE6 856 aa12.21□□□□□ -0.45
VPS13A-205ENST00000376636 STK25O00506 426 aa12.21□□□□□ -0.45
VPS13A-205ENST00000376636 SPAG6O75602 509 aa12.21□□□□□ -0.45
VPS13A-205ENST00000376636 PSMC3P17980 439 aa12.21□□□□□ -0.45
VPS13A-205ENST00000376636 ARL4DP49703 201 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms