RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 SNX24Q9Y343 169 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 ALDH1A1P00352 501 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 NT5C2P49902 561 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 SNRNP48Q6IEG0 339 aaKnown RBP13.13□□□□□ -0.31
VPS13A-204ENST00000376634 POTEAQ6S8J7 498 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 SNX31Q8N9S9 440 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 DYNLL2Q96FJ2 89 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 CENPAP49450 140 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 RFWD2Q8NHY2 731 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 SPATA33Q96N06 139 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 C10orf88Q9H8K7 445 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 PCSK1NQ9UHG2 260 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 A0A087WWV3 80 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 CYTH1Q15438 398 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 MFSD14CQ5VZR4 134 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 SIK2Q9H0K1 926 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 CDK12Q9NYV4 1490 aaPredicted RBP13.13□□□□□ -0.31
VPS13A-204ENST00000376634 PFASO15067 1338 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 TCP11X1B4DZS4 312 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 LCP1P13796 627 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 COASYQ13057 564 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 SMAD1Q15797 465 aaKnown RBP13.13□□□□□ -0.31
VPS13A-204ENST00000376634 C16orf89Q6UX73 402 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 PPP2R3CQ969Q6 453 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 FAM167BQ9BTA0 163 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 SPON2Q9BUD6 331 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 PGM1P36871 562 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 PPP1R18Q6NYC8 613 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 C2orf69Q8N8R5 385 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 GPR108Q9NPR9 543 aa13.13□□□□□ -0.31
VPS13A-204ENST00000376634 TRIM71Q2Q1W2 868 aaKnown RBP13.12□□□□□ -0.31
VPS13A-204ENST00000376634 RHOT1Q8IXI2 618 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 KCNN4O15554 427 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 IFNAR1P17181 557 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 C4BPBP20851 252 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 NCKAP1LP55160 1127 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 CCDC137Q6PK04 289 aaKnown RBP13.12□□□□□ -0.31
VPS13A-204ENST00000376634 ENOSF1Q7L5Y1 443 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 FGD2Q7Z6J4 655 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 NLRP10Q86W26 655 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 CLEC4FQ8N1N0 589 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 MMP19Q99542 508 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 TBC1D22BQ9NU19 505 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 PSD3Q9NYI0 1048 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 GRAMD1AQ96CP6 724 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 SUPT3HB4E1H0 165 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 MYO1CO00159 1063 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 LIFRP42702 1097 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 SKIV2LQ15477 1246 aaKnown RBP13.12□□□□□ -0.31
VPS13A-204ENST00000376634 PHKG1Q16816 387 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 FAM83BQ5T0W9 1011 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 BTBD8Q5XKL5 378 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 NFRKBQ6P4R8 1299 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 WWP1Q9H0M0 922 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 PAPOLBQ9NRJ5 636 aaKnown RBP13.12□□□□□ -0.31
VPS13A-204ENST00000376634 HOXC10Q9NYD6 342 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 DOLKQ9UPQ8 538 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 FOXP2O15409 715 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 HOXD10P28358 340 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 ADCK2Q7Z695 626 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 ZNF560Q96MR9 790 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 CDYLQ9Y232 598 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 SFI1A8K8P3 1242 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 KCNH2Q12809 1159 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 TMA16Q96EY4 203 aaKnown RBP13.12□□□□□ -0.31
VPS13A-204ENST00000376634 STAP2Q9UGK3 403 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 TARSL2A2RTX5 802 aaKnown RBP13.12□□□□□ -0.31
VPS13A-204ENST00000376634 MRPS25P82663 173 aaKnown RBP13.12□□□□□ -0.31
VPS13A-204ENST00000376634 BPIFA3Q9BQP9 254 aa13.12□□□□□ -0.31
VPS13A-204ENST00000376634 CSTF3Q12996 717 aaKnown RBP13.11□□□□□ -0.31
VPS13A-204ENST00000376634 TP53BP2Q13625 1128 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 TUBGCP3Q96CW5 907 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 GH2P01242 217 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 CYBBP04839 570 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 HSPA9P38646 679 aaKnown RBP13.11□□□□□ -0.31
VPS13A-204ENST00000376634 C16orf72Q14CZ0 275 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 DUOXA2Q1HG44 320 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 C11orf70Q9BRQ4 267 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 ZCCHC11Q5TAX3 1644 aaKnown RBP13.11□□□□□ -0.31
VPS13A-204ENST00000376634 MYO3BQ8WXR4 1341 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 PLEKHG1Q9ULL1 1385 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 ENO1P06733 434 aaKnown RBP13.11□□□□□ -0.31
VPS13A-204ENST00000376634 MYL2P10916 166 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 STAT3P40763 770 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 DHX34Q14147 1143 aaKnown RBP13.11□□□□□ -0.31
VPS13A-204ENST00000376634 IYDQ6PHW0 289 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.11□□□□□ -0.31
VPS13A-204ENST00000376634 LATS2Q9NRM7 1088 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 CYP2D7A0A087X1C5 515 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 POTEMA6NI47 508 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 AKAP10O43572 662 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 SNAP25P60880 206 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 KNOP1Q1ED39 458 aaKnown RBP13.11□□□□□ -0.31
VPS13A-204ENST00000376634 CCDC103Q8IW40 242 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 EME1Q96AY2 570 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 ATP6V1G3Q96LB4 118 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 PLEKHA5Q9HAU0 1116 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 RBAKQ9NYW8 714 aaPredicted RBP13.11□□□□□ -0.31
VPS13A-204ENST00000376634 PKP3Q9Y446 797 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 RP1P56715 2156 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms