RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 PLXNA3P51805 1871 aa23.8■■□□□ 1.4
CCDC28B-201ENST00000373602 ELAVL2Q12926 359 aaKnown RBP23.8■■□□□ 1.4
CCDC28B-201ENST00000373602 XKR4Q5GH76 650 aa23.8■■□□□ 1.4
CCDC28B-201ENST00000373602 GLRA4Q5JXX5 417 aa23.8■■□□□ 1.4
CCDC28B-201ENST00000373602 RTP2Q5QGT7 225 aa23.8■■□□□ 1.4
CCDC28B-201ENST00000373602 MPZL3Q6UWV2 235 aa23.8■■□□□ 1.4
CCDC28B-201ENST00000373602 ALKAL1Q6UXT8 129 aa23.8■■□□□ 1.4
CCDC28B-201ENST00000373602 ZBTB33Q86T24 672 aa23.8■■□□□ 1.4
CCDC28B-201ENST00000373602 LRRC15Q8TF66 581 aa23.8■■□□□ 1.4
CCDC28B-201ENST00000373602 INTS4Q96HW7 963 aaKnown RBP23.8■■□□□ 1.4
CCDC28B-201ENST00000373602 TTPALQ9BTX7 342 aa23.8■■□□□ 1.4
CCDC28B-201ENST00000373602 RHOBTB2Q9BYZ6 727 aa23.8■■□□□ 1.4
CCDC28B-201ENST00000373602 TOPORSQ9NS56 1045 aaPredicted RBP23.8■■□□□ 1.4
CCDC28B-201ENST00000373602 SMIM28A0A1B0GU29 152 aa23.79■■□□□ 1.4
CCDC28B-201ENST00000373602 TMEM189-UBE2V1I3L0A0 370 aa23.79■■□□□ 1.4
CCDC28B-201ENST00000373602 SYT1P21579 422 aa23.79■■□□□ 1.4
CCDC28B-201ENST00000373602 YARSP54577 528 aaKnown RBP23.79■■□□□ 1.4
CCDC28B-201ENST00000373602 CACNB1Q02641 598 aaPredicted RBP23.79■■□□□ 1.4
CCDC28B-201ENST00000373602 STRN3Q13033 797 aa23.79■■□□□ 1.4
CCDC28B-201ENST00000373602 FAM171A1Q5VUB5 890 aa23.79■■□□□ 1.4
CCDC28B-201ENST00000373602 LILRA6Q6PI73 481 aa23.79■■□□□ 1.4
CCDC28B-201ENST00000373602 BMP8AQ7Z5Y6 402 aa23.79■■□□□ 1.4
CCDC28B-201ENST00000373602 PALB2Q86YC2 1186 aa23.79■■□□□ 1.4
CCDC28B-201ENST00000373602 ZDHHC14Q8IZN3 488 aa23.79■■□□□ 1.4
CCDC28B-201ENST00000373602 TDRD5Q8NAT2 981 aaKnown RBP23.79■■□□□ 1.4
CCDC28B-201ENST00000373602 TCHPQ9BT92 498 aa23.79■■□□□ 1.4
CCDC28B-201ENST00000373602 BLOC1S4Q9NUP1 217 aa23.79■■□□□ 1.4
CCDC28B-201ENST00000373602 LARSQ9P2J5 1176 aaKnown RBP23.79■■□□□ 1.4
CCDC28B-201ENST00000373602 ODF2LQ9ULJ1 636 aa23.79■■□□□ 1.4
CCDC28B-201ENST00000373602 MYH11P35749 1972 aa23.78■■□□□ 1.4
CCDC28B-201ENST00000373602 TMEM221A6NGB7 291 aa23.78■■□□□ 1.4
CCDC28B-201ENST00000373602 M0R296 226 aa23.78■■□□□ 1.4
CCDC28B-201ENST00000373602 TGM5O43548 720 aa23.78■■□□□ 1.4
CCDC28B-201ENST00000373602 PAPLNO95428 1278 aa23.78■■□□□ 1.4
CCDC28B-201ENST00000373602 RPL17P18621 184 aaKnown RBP23.78■■□□□ 1.4
CCDC28B-201ENST00000373602 OSTNP61366 133 aa23.78■■□□□ 1.4
CCDC28B-201ENST00000373602 SIGLEC14Q08ET2 396 aa23.78■■□□□ 1.4
CCDC28B-201ENST00000373602 DCLRE1AQ6PJP8 1040 aa23.78■■□□□ 1.4
CCDC28B-201ENST00000373602 PRSS55Q6UWB4 352 aaPredicted RBP23.78■■□□□ 1.4
CCDC28B-201ENST00000373602 CYP26C1Q6V0L0 522 aa23.78■■□□□ 1.4
CCDC28B-201ENST00000373602 PIK3R5Q8WYR1 880 aa23.78■■□□□ 1.4
CCDC28B-201ENST00000373602 KCNN1Q92952 543 aa23.78■■□□□ 1.4
CCDC28B-201ENST00000373602 ZBTB45Q96K62 511 aaPredicted RBP23.78■■□□□ 1.4
CCDC28B-201ENST00000373602 UROC1Q96N76 676 aa23.78■■□□□ 1.4
CCDC28B-201ENST00000373602 ACAP3Q96P50 834 aa23.78■■□□□ 1.4
CCDC28B-201ENST00000373602 PLEKHA4Q9H4M7 779 aa23.78■■□□□ 1.4
CCDC28B-201ENST00000373602 CLIC4Q9Y696 253 aa23.78■■□□□ 1.4
CCDC28B-201ENST00000373602 DENND4AQ7Z401 1863 aa23.78■■□□□ 1.4
CCDC28B-201ENST00000373602 H0YCG3 227 aa23.77■■□□□ 1.4
CCDC28B-201ENST00000373602 TOM1L1O75674 476 aa23.77■■□□□ 1.4
CCDC28B-201ENST00000373602 PLCG1P19174 1290 aa23.77■■□□□ 1.4
CCDC28B-201ENST00000373602 NCKAP1LP55160 1127 aa23.77■■□□□ 1.4
CCDC28B-201ENST00000373602 RESTQ13127 1097 aa23.77■■□□□ 1.4
CCDC28B-201ENST00000373602 KARSQ15046 597 aaKnown RBP23.77■■□□□ 1.4
CCDC28B-201ENST00000373602 PTPAQ15257 358 aa23.77■■□□□ 1.4
CCDC28B-201ENST00000373602 ZPBP2Q6X784 338 aa23.77■■□□□ 1.4
CCDC28B-201ENST00000373602 CCDC149Q6ZUS6 474 aa23.77■■□□□ 1.4
CCDC28B-201ENST00000373602 GPBP1Q86WP2 473 aa23.77■■□□□ 1.4
CCDC28B-201ENST00000373602 GLYCTKQ8IVS8 523 aa23.77■■□□□ 1.4
CCDC28B-201ENST00000373602 PLCD3Q8N3E9 789 aa23.77■■□□□ 1.4
CCDC28B-201ENST00000373602 LNX1Q8TBB1 728 aaPredicted RBP23.77■■□□□ 1.4
CCDC28B-201ENST00000373602 RAD54LQ92698 747 aa23.77■■□□□ 1.4
CCDC28B-201ENST00000373602 MFSD14AQ96MC6 490 aa23.77■■□□□ 1.4
CCDC28B-201ENST00000373602 REEP2Q9BRK0 252 aa23.77■■□□□ 1.4
CCDC28B-201ENST00000373602 CCSER1Q9C0I3 900 aa23.77■■□□□ 1.4
CCDC28B-201ENST00000373602 TRIP11Q15643 1979 aa23.77■■□□□ 1.4
CCDC28B-201ENST00000373602 CCDC195A0A1B0GUA6 201 aa23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 RFPL2O75678 378 aa23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 B3GAT3O94766 335 aa23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 SPATA31D3P0C874 917 aa23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 MYBP10242 640 aa23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 IGFBP6P24592 240 aaPredicted RBP23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 PLA2G5P39877 138 aa23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 CLCNKBP51801 687 aa23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 SOX4Q06945 474 aaPredicted RBP23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 DHX8Q14562 1220 aaKnown RBP23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 PSMD5Q16401 504 aa23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 UPP1Q16831 310 aa23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 CD300LGQ6UXG3 332 aa23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 SPATA31D4Q6ZUB0 917 aa23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 CEP57Q86XR8 500 aa23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 KREMEN2Q8NCW0 462 aa23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 RASSF8Q8NHQ8 419 aa23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 SNX27Q96L92 541 aa23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 CLSTN3Q9BQT9 956 aa23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 SLC38A7Q9NVC3 462 aa23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 SORCS3Q9UPU3 1222 aa23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 C2orf16Q68DN1 1984 aa23.76■■□□□ 1.39
CCDC28B-201ENST00000373602 K7ELQ4 463 aaPredicted RBP23.75■■□□□ 1.39
CCDC28B-201ENST00000373602 KCNE1P15382 129 aa23.75■■□□□ 1.39
CCDC28B-201ENST00000373602 ZNF131P52739 623 aa23.75■■□□□ 1.39
CCDC28B-201ENST00000373602 MCM6Q14566 821 aa23.75■■□□□ 1.39
CCDC28B-201ENST00000373602 NOLC1Q14978 699 aaKnown RBP eCLIP23.75■■□□□ 1.39
CCDC28B-201ENST00000373602 PDXDC1Q6P996 788 aa23.75■■□□□ 1.39
CCDC28B-201ENST00000373602 OTOP3Q7RTS5 596 aa23.75■■□□□ 1.39
CCDC28B-201ENST00000373602 HAUS6Q7Z4H7 955 aa23.75■■□□□ 1.39
CCDC28B-201ENST00000373602 PBXIP1Q96AQ6 731 aa23.75■■□□□ 1.39
CCDC28B-201ENST00000373602 ZNF707Q96C28 371 aaPredicted RBP23.75■■□□□ 1.39
CCDC28B-201ENST00000373602 ACSF2Q96CM8 615 aaPredicted RBP23.75■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms