RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 MTCL1Q9Y4B5 1905 aaKnown RBP20.75■□□□□ 0.91
CKS1B-203ENST00000368439 SMIM28A0A1B0GU29 152 aa20.75■□□□□ 0.91
CKS1B-203ENST00000368439 MYMKA6NI61 221 aa20.75■□□□□ 0.91
CKS1B-203ENST00000368439 KIF4AO95239 1232 aa20.75■□□□□ 0.91
CKS1B-203ENST00000368439 PIGRP01833 764 aa20.75■□□□□ 0.91
CKS1B-203ENST00000368439 KRT18P05783 430 aaKnown RBP20.75■□□□□ 0.91
CKS1B-203ENST00000368439 HOXB8P17481 243 aaPredicted RBP20.75■□□□□ 0.91
CKS1B-203ENST00000368439 IGFBP6P24592 240 aaPredicted RBP20.75■□□□□ 0.91
CKS1B-203ENST00000368439 TXLNAP40222 546 aa20.75■□□□□ 0.91
CKS1B-203ENST00000368439 GLUD2P49448 558 aa20.75■□□□□ 0.91
CKS1B-203ENST00000368439 MCL1Q07820 350 aa20.75■□□□□ 0.91
CKS1B-203ENST00000368439 CD300LGQ6UXG3 332 aa20.75■□□□□ 0.91
CKS1B-203ENST00000368439 DNAJC19Q96DA6 116 aa20.75■□□□□ 0.91
CKS1B-203ENST00000368439 B3GALT6Q96L58 329 aa20.75■□□□□ 0.91
CKS1B-203ENST00000368439 SNX27Q96L92 541 aa20.75■□□□□ 0.91
CKS1B-203ENST00000368439 TCHPQ9BT92 498 aa20.75■□□□□ 0.91
CKS1B-203ENST00000368439 CCDC94Q9BW85 323 aaPredicted RBP20.75■□□□□ 0.91
CKS1B-203ENST00000368439 RXFP1Q9HBX9 757 aa20.75■□□□□ 0.91
CKS1B-203ENST00000368439 TBX20Q9UMR3 447 aa20.75■□□□□ 0.91
CKS1B-203ENST00000368439 K7ENM7 598 aa20.74■□□□□ 0.91
CKS1B-203ENST00000368439 C2CD2LO14523 706 aa20.74■□□□□ 0.91
CKS1B-203ENST00000368439 URODP06132 367 aa20.74■□□□□ 0.91
CKS1B-203ENST00000368439 SCP2P22307 547 aa20.74■□□□□ 0.91
CKS1B-203ENST00000368439 NMT1P30419 496 aaKnown RBP20.74■□□□□ 0.91
CKS1B-203ENST00000368439 CLCN4P51793 760 aa20.74■□□□□ 0.91
CKS1B-203ENST00000368439 GTF2BQ00403 316 aa20.74■□□□□ 0.91
CKS1B-203ENST00000368439 SOX4Q06945 474 aaPredicted RBP20.74■□□□□ 0.91
CKS1B-203ENST00000368439 NOLC1Q14978 699 aaKnown RBP eCLIP20.74■□□□□ 0.913e-12■■■■□ 22
CKS1B-203ENST00000368439 CCDC73Q6ZRK6 1079 aa20.74■□□□□ 0.91
CKS1B-203ENST00000368439 DYMQ7RTS9 669 aa20.74■□□□□ 0.91
CKS1B-203ENST00000368439 DDX12PQ92771 950 aa20.74■□□□□ 0.91
CKS1B-203ENST00000368439 ZMAT2Q96NC0 199 aaKnown RBP20.74■□□□□ 0.91
CKS1B-203ENST00000368439 ACAP3Q96P50 834 aa20.74■□□□□ 0.91
CKS1B-203ENST00000368439 APOL5Q9BWW9 433 aa20.74■□□□□ 0.91
CKS1B-203ENST00000368439 EMILIN2Q9BXX0 1053 aa20.74■□□□□ 0.91
CKS1B-203ENST00000368439 PANK2Q9BZ23 570 aa20.74■□□□□ 0.91
CKS1B-203ENST00000368439 ST6GALNAC4Q9H4F1 302 aa20.74■□□□□ 0.91
CKS1B-203ENST00000368439 ANKFY1Q9P2R3 1169 aa20.74■□□□□ 0.91
CKS1B-203ENST00000368439 TBCAO75347 108 aaKnown RBP20.73■□□□□ 0.91
CKS1B-203ENST00000368439 TADA2AO75478 443 aa20.73■□□□□ 0.91
CKS1B-203ENST00000368439 HARSP12081 509 aaKnown RBP20.73■□□□□ 0.91
CKS1B-203ENST00000368439 KCNE1P15382 129 aa20.73■□□□□ 0.91
CKS1B-203ENST00000368439 YARSP54577 528 aaKnown RBP20.73■□□□□ 0.91
CKS1B-203ENST00000368439 USP41Q3LFD5 358 aa20.73■□□□□ 0.91
CKS1B-203ENST00000368439 SEZ6Q53EL9 994 aa20.73■□□□□ 0.91
CKS1B-203ENST00000368439 AXDND1Q5T1B0 1012 aaPredicted RBP20.73■□□□□ 0.91
CKS1B-203ENST00000368439 SLC39A4Q6P5W5 647 aa20.73■□□□□ 0.91
CKS1B-203ENST00000368439 SV2BQ7L1I2 683 aa20.73■□□□□ 0.91
CKS1B-203ENST00000368439 PPFIBP1Q86W92 1011 aa20.73■□□□□ 0.91
CKS1B-203ENST00000368439 GPR65Q8IYL9 337 aa20.73■□□□□ 0.91
CKS1B-203ENST00000368439 FEZF2Q8TBJ5 459 aa20.73■□□□□ 0.91
CKS1B-203ENST00000368439 HASPINQ8TF76 798 aa20.73■□□□□ 0.91
CKS1B-203ENST00000368439 GOLGA2P5Q9HBQ8 144 aa20.73■□□□□ 0.91
CKS1B-203ENST00000368439 TOPORSQ9NS56 1045 aaPredicted RBP20.73■□□□□ 0.91
CKS1B-203ENST00000368439 CNTN3Q9P232 1028 aa20.73■□□□□ 0.91
CKS1B-203ENST00000368439 CDH22Q9UJ99 828 aa20.73■□□□□ 0.91
CKS1B-203ENST00000368439 SSX2IPQ9Y2D8 614 aa20.73■□□□□ 0.91
CKS1B-203ENST00000368439 TMEM189-UBE2V1I3L0A0 370 aa20.72■□□□□ 0.91
CKS1B-203ENST00000368439 TEX28O15482 410 aa20.72■□□□□ 0.91
CKS1B-203ENST00000368439 CLDN3O15551 220 aa20.72■□□□□ 0.91
CKS1B-203ENST00000368439 FAM189A1O60320 539 aa20.72■□□□□ 0.91
CKS1B-203ENST00000368439 KLRC2P26717 231 aa20.72■□□□□ 0.91
CKS1B-203ENST00000368439 SSTR3P32745 418 aaPredicted RBP20.72■□□□□ 0.91
CKS1B-203ENST00000368439 STAT6P42226 847 aa20.72■□□□□ 0.91
CKS1B-203ENST00000368439 E2F4Q16254 413 aa20.72■□□□□ 0.91
CKS1B-203ENST00000368439 UPP1Q16831 310 aa20.72■□□□□ 0.91
CKS1B-203ENST00000368439 SLC10A6Q3KNW5 377 aa20.72■□□□□ 0.91
CKS1B-203ENST00000368439 FOXD4L6Q3SYB3 417 aaPredicted RBP20.72■□□□□ 0.91
CKS1B-203ENST00000368439 RTP2Q5QGT7 225 aa20.72■□□□□ 0.91
CKS1B-203ENST00000368439 KANK3Q6NY19 840 aa20.72■□□□□ 0.91
CKS1B-203ENST00000368439 SHC4Q6S5L8 630 aa20.72■□□□□ 0.91
CKS1B-203ENST00000368439 FOXD4L3Q6VB84 417 aaPredicted RBP20.72■□□□□ 0.91
CKS1B-203ENST00000368439 SFR1Q86XK3 245 aa20.72■□□□□ 0.91
CKS1B-203ENST00000368439 MAP4K3Q8IVH8 894 aa20.72■□□□□ 0.91
CKS1B-203ENST00000368439 STRA6Q9BX79 667 aa20.72■□□□□ 0.91
CKS1B-203ENST00000368439 ADAM7Q9H2U9 754 aa20.72■□□□□ 0.91
CKS1B-203ENST00000368439 ZHX3Q9H4I2 956 aa20.72■□□□□ 0.91
CKS1B-203ENST00000368439 EPHX3Q9H6B9 360 aa20.72■□□□□ 0.91
CKS1B-203ENST00000368439 DZANK1Q9NVP4 752 aa20.72■□□□□ 0.91
CKS1B-203ENST00000368439 ZDHHC9Q9Y397 364 aa20.72■□□□□ 0.91
CKS1B-203ENST00000368439 SF3B1O75533 1304 aaKnown RBP eCLIP20.72■□□□□ 0.91
CKS1B-203ENST00000368439 C2orf16Q68DN1 1984 aa20.72■□□□□ 0.91
CKS1B-203ENST00000368439 DENND4AQ7Z401 1863 aa20.71■□□□□ 0.91
CKS1B-203ENST00000368439 LOC730098B7Z3J9 87 aa20.71■□□□□ 0.91
CKS1B-203ENST00000368439 CUTAO60888 179 aa20.71■□□□□ 0.91
CKS1B-203ENST00000368439 PPP1R37O75864 691 aa20.71■□□□□ 0.91
CKS1B-203ENST00000368439 CLCNKBP51801 687 aa20.71■□□□□ 0.91
CKS1B-203ENST00000368439 CBX2Q14781 532 aaPredicted RBP20.71■□□□□ 0.91
CKS1B-203ENST00000368439 TPRNQ4KMQ1 711 aa20.71■□□□□ 0.91
CKS1B-203ENST00000368439 ZC2HC1CQ53FD0 456 aaPredicted RBP20.71■□□□□ 0.91
CKS1B-203ENST00000368439 ZNF720Q7Z2F6 126 aa20.71■□□□□ 0.91
CKS1B-203ENST00000368439 PDILTQ8N807 584 aa20.71■□□□□ 0.91
CKS1B-203ENST00000368439 C12orf76Q8N812 135 aaPredicted RBP20.71■□□□□ 0.91
CKS1B-203ENST00000368439 TMEM87AQ8NBN3 555 aa20.71■□□□□ 0.91
CKS1B-203ENST00000368439 C3orf58Q8NDZ4 430 aa20.71■□□□□ 0.91
CKS1B-203ENST00000368439 UROC1Q96N76 676 aa20.71■□□□□ 0.91
CKS1B-203ENST00000368439 PHF7Q9BWX1 381 aaPredicted RBP20.71■□□□□ 0.91
CKS1B-203ENST00000368439 ANK1P16157 1881 aa20.71■□□□□ 0.91
CKS1B-203ENST00000368439 FRMD3A2A2Y4 597 aa20.7■□□□□ 0.9
CKS1B-203ENST00000368439 PI4K2BG5E9Z4 385 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms