RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 MTMR1Q13613 665 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 PLCB4Q15147 1175 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 ACCSLQ4AC99 568 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 SPOPLQ6IQ16 392 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 HAUS1Q96CS2 278 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 FAM213AQ9BRX8 229 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 NOD2Q9HC29 1040 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 ANAPC5Q9UJX4 755 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 PNMA3Q9UL41 463 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 CTDP1Q9Y5B0 961 aaPredicted RBP12.97□□□□□ -0.33
CLIP3-201ENST00000360535 HSPA6P17066 643 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 CNGA1P29973 690 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 FMNL3Q8IVF7 1028 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 NLGN1Q8N2Q7 840 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 RPS6KC1Q96S38 1066 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 KDM4CQ9H3R0 1056 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 TMX2Q9Y320 296 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 PCDHA3Q9Y5H8 950 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 AFF2P51816 1311 aa12.96□□□□□ -0.33
CLIP3-201ENST00000360535 KLRG2A4D1S0 409 aaPredicted RBP12.96□□□□□ -0.33
CLIP3-201ENST00000360535 SRRM3A6NNA2 597 aaPredicted RBP12.96□□□□□ -0.33
CLIP3-201ENST00000360535 PIAS1O75925 651 aa12.96□□□□□ -0.33
CLIP3-201ENST00000360535 CDC25CP30307 473 aa12.96□□□□□ -0.33
CLIP3-201ENST00000360535 FAM182AQ5T1J6 154 aa12.96□□□□□ -0.33
CLIP3-201ENST00000360535 KRT39Q6A163 491 aa12.96□□□□□ -0.33
CLIP3-201ENST00000360535 FAM71AQ8IYT1 594 aa12.96□□□□□ -0.33
CLIP3-201ENST00000360535 CYP4X1Q8N118 509 aa12.96□□□□□ -0.33
CLIP3-201ENST00000360535 ART4Q93070 314 aa12.96□□□□□ -0.33
CLIP3-201ENST00000360535 C11orf70Q9BRQ4 267 aa12.96□□□□□ -0.33
CLIP3-201ENST00000360535 STMN4Q9H169 189 aaPredicted RBP12.96□□□□□ -0.33
CLIP3-201ENST00000360535 GEMIN8Q9NWZ8 242 aaKnown RBP12.96□□□□□ -0.33
CLIP3-201ENST00000360535 SERPINA10Q9UK55 444 aa12.96□□□□□ -0.33
CLIP3-201ENST00000360535 A8MUI8 341 aa12.96□□□□□ -0.34
CLIP3-201ENST00000360535 POC1B-GALNT4F8VUJ3 575 aa12.96□□□□□ -0.34
CLIP3-201ENST00000360535 H0YIN7 160 aa12.96□□□□□ -0.34
CLIP3-201ENST00000360535 HNRNPDLO14979 420 aaKnown RBP12.96□□□□□ -0.34
CLIP3-201ENST00000360535 ATF2P15336 505 aa12.96□□□□□ -0.34
CLIP3-201ENST00000360535 ADSSP30520 456 aa12.96□□□□□ -0.34
CLIP3-201ENST00000360535 DRG2P55039 364 aaKnown RBP12.96□□□□□ -0.34
CLIP3-201ENST00000360535 MYO1EQ12965 1108 aa12.96□□□□□ -0.34
CLIP3-201ENST00000360535 TMED2Q15363 201 aa12.96□□□□□ -0.34
CLIP3-201ENST00000360535 EP400NLQ6ZTU2 488 aa12.96□□□□□ -0.34
CLIP3-201ENST00000360535 ZNF365Q70YC5 407 aa12.96□□□□□ -0.34
CLIP3-201ENST00000360535 C3orf20Q8ND61 904 aa12.96□□□□□ -0.34
CLIP3-201ENST00000360535 ACSF2Q96CM8 615 aaPredicted RBP12.96□□□□□ -0.34
CLIP3-201ENST00000360535 TAAR1Q96RJ0 339 aa12.96□□□□□ -0.34
CLIP3-201ENST00000360535 ZNF341Q9BYN7 854 aa12.96□□□□□ -0.34
CLIP3-201ENST00000360535 ECT2Q9H8V3 914 aa12.96□□□□□ -0.34
CLIP3-201ENST00000360535 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.96□□□□□ -0.34
CLIP3-201ENST00000360535 C21orf2O43822 256 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 ATP6V1G2O95670 118 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 RALAP11233 206 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 TNNI1P19237 187 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 NEDD9Q14511 834 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 DLGAP5Q15398 846 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 KIFAP3Q92845 792 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 STAMBPL1Q96FJ0 436 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 KMT5AQ9NQR1 393 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 RAB20Q9NX57 234 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 CDR2Q01850 454 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 TKFCQ3LXA3 575 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 SV2AQ7L0J3 742 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 CYFIP1Q7L576 1253 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 SLC9A9Q8IVB4 645 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 KLHL29Q96CT2 875 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 AAASQ9NRG9 546 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 SCN9AQ15858 1988 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 UBE4BO95155 1302 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 KIF13BQ9NQT8 1826 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 CFHP08603 1231 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 ATF7P17544 494 aaPredicted RBP12.95□□□□□ -0.34
CLIP3-201ENST00000360535 MPP2Q14168 576 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 NAA25Q14CX7 972 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 SIX1Q15475 284 aaPredicted RBP12.95□□□□□ -0.34
CLIP3-201ENST00000360535 NFIL3Q16649 462 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 ATP13A4Q4VNC1 1196 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 FBXL13Q8NEE6 735 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 CENPTQ96BT3 561 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 RUNDC3BQ96NL0 473 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 TGS1Q96RS0 853 aaKnown RBP12.95□□□□□ -0.34
CLIP3-201ENST00000360535 PLVAPQ9BX97 442 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.95□□□□□ -0.34
CLIP3-201ENST00000360535 GTF3C4Q9UKN8 822 aa12.95□□□□□ -0.34
CLIP3-201ENST00000360535 IGF2BP3O00425 579 aaKnown RBP eCLIP12.94□□□□□ -0.34
CLIP3-201ENST00000360535 ASAP2O43150 1006 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 SNX3O60493 162 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 CLNS1AP54105 237 aaKnown RBP12.94□□□□□ -0.34
CLIP3-201ENST00000360535 XRCC4Q13426 336 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 CLUL1Q15846 466 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 PIGWQ7Z7B1 504 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 PARD3BQ8TEW8 1205 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 CD101Q93033 1021 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 CEP170P1Q96L14 293 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 RANBP17Q9H2T7 1088 aaKnown RBP12.94□□□□□ -0.34
CLIP3-201ENST00000360535 YY1AP1Q9H869 796 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 CNOT7Q9UIV1 285 aaKnown RBP12.94□□□□□ -0.34
CLIP3-201ENST00000360535 USP15Q9Y4E8 981 aaPredicted RBP12.94□□□□□ -0.34
CLIP3-201ENST00000360535 GAS8O95995 478 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 CETPP11597 493 aa12.94□□□□□ -0.34
CLIP3-201ENST00000360535 KRT10P13645 584 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms