RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 CDH6P55285 790 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 NLRP11P59045 1033 aaKnown RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 HIC1Q14526 733 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 MTFR1Q15390 333 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 HIF1AQ16665 826 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 DNAL1Q4LDG9 190 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 ANKRD40Q6AI12 368 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 C16orf89Q6UX73 402 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 TADA1Q96BN2 335 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 ALDH8A1Q9H2A2 487 aaPredicted RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 ZFATQ9P243 1243 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 UVRAGQ9P2Y5 699 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 PCSK1NQ9UHG2 260 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 SFMBT1Q9UHJ3 866 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 FAM32AQ9Y421 112 aaKnown RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 SLC4A7Q9Y6M7 1214 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 ORC4O43929 436 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 IL18RAPO95256 599 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 MOCS2O96007 188 aaPredicted RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 CD4P01730 458 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 PNMA6AP0CW24 399 aaPredicted RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 PRCPP42785 496 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 ACADSBP45954 432 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 ACTR2P61160 394 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 RBP5P82980 135 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 SFSWAPQ12872 951 aaKnown RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 KCNB1Q14721 858 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 FAM47EQ6ZV65 393 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 ZNF467Q7Z7K2 595 aaPredicted RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 TTC30BQ8N4P2 665 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 ATL2Q8NHH9 583 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 AGPAT1Q99943 283 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 EIF2AK1Q9BQI3 630 aaKnown RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 CD209Q9NNX6 404 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 ERVK-7P63135 1459 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 POTECB2RU33 542 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 KBTBD13C9JR72 458 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 TLR2O60603 784 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 PRKCBP05771 671 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 CDC27P30260 824 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 PID1Q7Z2X4 250 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 DDX53Q86TM3 631 aaKnown RBP6.81□□□□□ -1.32
UPF2-201ENST00000356352 NLRP14Q86W24 1093 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 SYNE4Q8N205 404 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 ATPAF2Q8N5M1 289 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 ZFP42Q96MM3 310 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 SRP68Q9UHB9 627 aaKnown RBP6.81□□□□□ -1.32
UPF2-201ENST00000356352 KDM6AO15550 1401 aaPredicted RBP6.81□□□□□ -1.32
UPF2-201ENST00000356352 KIF1BO60333 1816 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 RASSF10A6NK89 507 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 TBC1D4O60343 1298 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 AGTP01019 485 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 RFC5P40937 340 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 EIF3EP60228 445 aaKnown RBP6.81□□□□□ -1.32
UPF2-201ENST00000356352 DAB2P98082 770 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 CUL3Q13618 768 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 PDIA5Q14554 519 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 CENPPQ6IPU0 288 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 PI16Q6UXB8 463 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 LRIG3Q6UXM1 1119 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 ADGRF4Q8IZF3 695 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 TEX9Q8N6V9 391 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 OR6J1Q8NGC5 347 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 COG1Q8WTW3 980 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 ZFYVE19Q96K21 471 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 JPH1Q9HDC5 661 aaPredicted RBP6.81□□□□□ -1.32
UPF2-201ENST00000356352 DNAJC5BQ9UF47 199 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 A2ML1A8K2U0 1454 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 GGCXP38435 758 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 CARSP49589 748 aaKnown RBP6.81□□□□□ -1.32
UPF2-201ENST00000356352 ARSEP51690 589 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 POTEAQ6S8J7 498 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 TBC1D10CQ8IV04 446 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 DCP1BQ8IZD4 617 aaKnown RBP6.81□□□□□ -1.32
UPF2-201ENST00000356352 OSBPL5Q9H0X9 879 aaPredicted RBP6.81□□□□□ -1.32
UPF2-201ENST00000356352 CATSPERBQ9H7T0 1116 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 MINPP1Q9UNW1 487 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 ATF5Q9Y2D1 282 aaPredicted RBP6.81□□□□□ -1.32
UPF2-201ENST00000356352 MAGEB2O15479 319 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 SRP72O76094 671 aaKnown RBP6.81□□□□□ -1.32
UPF2-201ENST00000356352 LCP1P13796 627 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 RGS4P49798 205 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 KRT17Q04695 432 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 FOXD4Q12950 439 aaPredicted RBP6.81□□□□□ -1.32
UPF2-201ENST00000356352 ARHGEF7Q14155 803 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 SDE2Q6IQ49 451 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 BBS7Q8IWZ6 715 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 B4GALNT2Q8NHY0 566 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 SAAL1Q96ER3 474 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 TMEM106CQ9BVX2 250 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 LY9Q9HBG7 655 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 VPS9D1Q9Y2B5 631 aa6.81□□□□□ -1.32
UPF2-201ENST00000356352 CFAP99D6REC4 459 aa6.8□□□□□ -1.32
UPF2-201ENST00000356352 PJA2O43164 708 aa6.8□□□□□ -1.32
UPF2-201ENST00000356352 DGAT1O75907 488 aa6.8□□□□□ -1.32
UPF2-201ENST00000356352 SASH1O94885 1247 aa6.8□□□□□ -1.32
UPF2-201ENST00000356352 ASMTLO95671 621 aa6.8□□□□□ -1.32
UPF2-201ENST00000356352 ATICP31939 592 aa6.8□□□□□ -1.32
UPF2-201ENST00000356352 YWHABP31946 246 aaKnown RBP6.8□□□□□ -1.32
UPF2-201ENST00000356352 BLVRAP53004 296 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms