RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 AK9Q5TCS8 1911 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 H0YCG3 227 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 HMGB3O15347 200 aaKnown RBP9.18□□□□□ -0.94
RTN3-202ENST00000339997 ATP5HO75947 161 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 KCTD2Q14681 263 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 TAF1BQ53T94 588 aaPredicted RBP9.18□□□□□ -0.94
RTN3-202ENST00000339997 CC2D2BQ6DHV5 1058 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 DPP9Q86TI2 863 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 USP38Q8NB14 1042 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 EME1Q96AY2 570 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 STAMBPL1Q96FJ0 436 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 RBM41Q96IZ5 413 aaKnown RBP9.18□□□□□ -0.94
RTN3-202ENST00000339997 RPF1Q9H9Y2 349 aaKnown RBP9.18□□□□□ -0.94
RTN3-202ENST00000339997 ZC4H2Q9NQZ6 224 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 ZNF446Q9NWS9 450 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 KCNG1Q9UIX4 513 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 USP21Q9UK80 565 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 ADGRB1O14514 1584 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 AGRPO00253 132 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 CDH16O75309 829 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 ADORA2BP29275 332 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 ITGA8P53708 1063 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 RCN1Q15293 331 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 SEZ6Q53EL9 994 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 MROH9Q5TGP6 573 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 PPP1R18Q6NYC8 613 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 TMED8Q6PL24 325 aaPredicted RBP9.18□□□□□ -0.94
RTN3-202ENST00000339997 ACAD11Q709F0 780 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 RHOT1Q8IXI2 618 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 ATP11CQ8NB49 1132 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 VPS39Q96JC1 886 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 SENP7Q9BQF6 1050 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 REEP2Q9BRK0 252 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 HPS5Q9UPZ3 1129 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 LEMD3Q9Y2U8 911 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 PSMD14O00487 310 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 PPEF1O14829 653 aaPredicted RBP9.17□□□□□ -0.94
RTN3-202ENST00000339997 FAM153BP0C7A2 387 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 ITGA4P13612 1032 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 CASP4P49662 377 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 WDR72Q3MJ13 1102 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 FAM153CQ494X1 144 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 KRT39Q6A163 491 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 FOXP4Q8IVH2 680 aaPredicted RBP9.17□□□□□ -0.94
RTN3-202ENST00000339997 TEX2Q8IWB9 1127 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 ZSWIM2Q8NEG5 633 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 PALMDQ9NP74 551 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 OSGEPQ9NPF4 335 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 AFF4Q9UHB7 1163 aaKnown RBP9.17□□□□□ -0.94
RTN3-202ENST00000339997 FAM153AQ9UHL3 310 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 SUGT1Q9Y2Z0 365 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 TMEM2Q9UHN6 1383 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 EP400Q96L91 3159 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 UTYO14607 1347 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 GRID2IPA4D2P6 1211 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 KCNN4O15554 427 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 HSPA8P11142 646 aaKnown RBP9.17□□□□□ -0.94
RTN3-202ENST00000339997 HLA-DPA1P20036 260 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 SCTRP47872 440 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 HEATR6Q6AI08 1181 aaKnown RBP9.17□□□□□ -0.94
RTN3-202ENST00000339997 USP33Q8TEY7 942 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 FUCA2Q9BTY2 467 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 KIFC3Q9BVG8 833 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 THAP2Q9H0W7 228 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 CAAP1Q9H8G2 361 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 EPB41L4AQ9HCS5 686 aaPredicted RBP9.17□□□□□ -0.94
RTN3-202ENST00000339997 C20orf96Q9NUD7 363 aaPredicted RBP9.17□□□□□ -0.94
RTN3-202ENST00000339997 ZFATQ9P243 1243 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 IPO11Q9UI26 975 aaKnown RBP9.17□□□□□ -0.94
RTN3-202ENST00000339997 STK36Q9NRP7 1315 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 ARHGEF28Q8N1W1 1705 aaKnown RBP9.17□□□□□ -0.94
RTN3-202ENST00000339997 FAM187AA6NFU0 413 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 FAM47DPA6NHR8 397 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 ZSCAN9O15535 394 aaPredicted RBP9.17□□□□□ -0.94
RTN3-202ENST00000339997 AKAP10O43572 662 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 UBOX5O94941 541 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 EIF3EP60228 445 aaKnown RBP9.17□□□□□ -0.94
RTN3-202ENST00000339997 KLHL38Q2WGJ6 581 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 IYDQ6PHW0 289 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 BTNL9Q6UXG8 535 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 ATL2Q8NHH9 583 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 NMD3Q96D46 503 aaKnown RBP9.17□□□□□ -0.94
RTN3-202ENST00000339997 HIC2Q96JB3 615 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 CALR3Q96L12 384 aaKnown RBP9.17□□□□□ -0.94
RTN3-202ENST00000339997 SMAD5Q99717 465 aaKnown RBP9.17□□□□□ -0.94
RTN3-202ENST00000339997 ERP44Q9BS26 406 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 FAM217BQ9NTX9 383 aaPredicted RBP9.17□□□□□ -0.94
RTN3-202ENST00000339997 NRXN3Q9Y4C0 1643 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 UBA6A0AVT1 1052 aaPredicted RBP9.17□□□□□ -0.94
RTN3-202ENST00000339997 MED7O43513 233 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 AGTP01019 485 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 S100BP04271 92 aaPredicted RBP9.17□□□□□ -0.94
RTN3-202ENST00000339997 C6orf10Q5SRN2 563 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 FAM136AQ96C01 138 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 FAM84BQ96KN1 310 aaPredicted RBP9.17□□□□□ -0.94
RTN3-202ENST00000339997 MXD3Q9BW11 206 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 CPSF3Q9UKF6 684 aaKnown RBP9.17□□□□□ -0.94
RTN3-202ENST00000339997 MLH3Q9UHC1 1453 aa9.17□□□□□ -0.94
RTN3-202ENST00000339997 KDM1AO60341 852 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 PIAS1O75925 651 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms