RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 EFCAB13Q8IY85 973 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 CCDC170Q8IYT3 715 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 PPP1R13LQ8WUF5 828 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 MKNK1Q9BUB5 465 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 ARFGAP3Q9NP61 516 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 CDY2AQ9Y6F7 541 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 NFASCO94856 1347 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 MCF2LO15068 1137 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 POMCP01189 267 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 TOB1P50616 345 aaPredicted RBP9.87□□□□□ -0.83
PTPRE-202ENST00000306042 DYNLT1P63172 113 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 NOP14P78316 857 aaKnown RBP9.87□□□□□ -0.83
PTPRE-202ENST00000306042 RBM10P98175 930 aaKnown RBP9.87□□□□□ -0.83
PTPRE-202ENST00000306042 FAM102AQ5T9C2 384 aaPredicted RBP9.87□□□□□ -0.83
PTPRE-202ENST00000306042 RHOT2Q8IXI1 618 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 NDUFAF2Q8N183 169 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 IL31RAQ8NI17 732 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 MRRFQ96E11 262 aaKnown RBP9.87□□□□□ -0.83
PTPRE-202ENST00000306042 NHEJ1Q9H9Q4 299 aaPredicted RBP9.87□□□□□ -0.83
PTPRE-202ENST00000306042 RBPJLQ9UBG7 517 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 PPP2R2CQ9Y2T4 447 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 TUBBP07437 444 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 ADCY8P40145 1251 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 FMO5P49326 533 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 PSMC6P62333 389 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 NME3Q13232 169 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 CTXN3Q4LDR2 81 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 VSTM4Q8IW00 320 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 UBLCP1Q8WVY7 318 aaPredicted RBP9.87□□□□□ -0.83
PTPRE-202ENST00000306042 PRIMPOLQ96LW4 560 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 CCDC68Q9H2F9 335 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 ZWILCHQ9H900 591 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 TMEM8AQ9HCN3 771 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 AGPAT3Q9NRZ7 376 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 SAMD15Q9P1V8 674 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 HDAC6Q9UBN7 1215 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 TJP2Q9UDY2 1190 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 IRX5P78411 483 aaPredicted RBP9.87□□□□□ -0.83
PTPRE-202ENST00000306042 MRPS6P82932 125 aaKnown RBP9.87□□□□□ -0.83
PTPRE-202ENST00000306042 BZW1Q7L1Q6 419 aaKnown RBP9.87□□□□□ -0.83
PTPRE-202ENST00000306042 TAB3Q8N5C8 712 aaPredicted RBP9.87□□□□□ -0.83
PTPRE-202ENST00000306042 PPTC7Q8NI37 304 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 NIF3L1Q9GZT8 377 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 FAM49BQ9NUQ9 324 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 IPO11Q9UI26 975 aaKnown RBP9.87□□□□□ -0.83
PTPRE-202ENST00000306042 EIF3CLB5ME19 914 aaKnown RBP9.87□□□□□ -0.83
PTPRE-202ENST00000306042 MOCS3O95396 460 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 ASGR1P07306 291 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 TCP1P17987 556 aaKnown RBP9.87□□□□□ -0.83
PTPRE-202ENST00000306042 GARTP22102 1010 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 GIT2Q14161 759 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 KCNA10Q16322 511 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 SH3D19Q5HYK7 790 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 TAOK1Q7L7X3 1001 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 PLPPR4Q7Z2D5 763 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 HSPH1Q92598 858 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 EIF3CQ99613 913 aaKnown RBP9.87□□□□□ -0.83
PTPRE-202ENST00000306042 SIK2Q9H0K1 926 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 RAB17Q9H0T7 212 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 RSAD1Q9HA92 442 aa9.87□□□□□ -0.83
PTPRE-202ENST00000306042 DIS3Q9Y2L1 958 aaKnown RBP9.87□□□□□ -0.83
PTPRE-202ENST00000306042 RPTORQ8N122 1335 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 KIAA0754O94854 1291 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 HSD17B4P51659 736 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 NAA35Q5VZE5 725 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 ZNF280DQ6N043 979 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 HASPINQ8TF76 798 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 FTHL17Q9BXU8 183 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 MAF1Q9H063 256 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.86□□□□□ -0.83
PTPRE-202ENST00000306042 DDX41Q9UJV9 622 aaKnown RBP9.86□□□□□ -0.83
PTPRE-202ENST00000306042 ANAPC7Q9UJX3 599 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 CASTOR2A6NHX0 329 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 NEMP1O14524 444 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 SNHG28P0DPA3 235 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 LMNB2Q03252 620 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 AAK1Q2M2I8 961 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 IFT20Q8IY31 132 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 SPTLC3Q9NUV7 552 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 SNTG2Q9NY99 539 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 ANAPC5Q9UJX4 755 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 SH3BP1Q9Y3L3 701 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 TMEM150BA6NC51 233 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 LRRC53A6NM62 1247 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 GIPC1O14908 333 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 SLC4A1P02730 911 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 MCF2P10911 925 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 EIF4BP23588 611 aaKnown RBP9.86□□□□□ -0.83
PTPRE-202ENST00000306042 PTPAQ15257 358 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 GEN1Q17RS7 908 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 ACCSLQ4AC99 568 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 EFHC2Q5JST6 749 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 ZNF384Q8TF68 577 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 LCMT1Q9UIC8 334 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 DSEQ9UL01 958 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 GOLGA6L7A0A1B0GV03 622 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 SGK1O00141 431 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 EML1O00423 815 aa9.86□□□□□ -0.83
PTPRE-202ENST00000306042 PARNO95453 639 aaKnown RBP9.86□□□□□ -0.83
PTPRE-202ENST00000306042 IVLP07476 585 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms