RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ESRRBO95718 433 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 RSPH10BP0C881 870 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 SERPINB3P29508 390 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 ELF3P78545 371 aaPredicted RBP6.77□□□□□ -1.33
VPS35-201ENST00000299138 LAMB3Q13751 1172 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 KLHL38Q2WGJ6 581 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 USP49Q70CQ1 688 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 PASD1Q8IV76 773 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 TPCN2Q8NHX9 752 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 HES6Q96HZ4 224 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 NARS2Q96I59 477 aaKnown RBP6.77□□□□□ -1.33
VPS35-201ENST00000299138 SUGCTQ9HAC7 445 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 PCDHA12Q9UN75 941 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 PCDHGA3Q9Y5H0 932 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 PNMA6FA0A0J9YX94 578 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 PPIP5K2O43314 1243 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 CCNT1O60563 726 aaKnown RBP6.77□□□□□ -1.33
VPS35-201ENST00000299138 SLC9A1P19634 815 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 HDLBPQ00341 1268 aaKnown RBP6.77□□□□□ -1.33
VPS35-201ENST00000299138 STK4Q13043 487 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 DNAL1Q4LDG9 190 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 DAB2IPQ5VWQ8 1189 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 C4orf22Q6V702 233 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 SLC9A9Q8IVB4 645 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 ICA1LQ8NDH6 482 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 MAML1Q92585 1016 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 SNX25Q9H3E2 840 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 ADAMTS1Q9UHI8 967 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 THRAP3Q9Y2W1 955 aaKnown RBP6.77□□□□□ -1.33
VPS35-201ENST00000299138 LINC00854A0A1B0GVQ3 168 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 SPDYE2BA6NHP3 402 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 CAND2O75155 1236 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 SEMA3DO95025 777 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 SPDYE6P0CI01 402 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 SERPINB10P48595 397 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 ERVK-9P63128 1117 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 CTTNQ14247 550 aaKnown RBP6.77□□□□□ -1.33
VPS35-201ENST00000299138 KNOP1Q1ED39 458 aaKnown RBP6.77□□□□□ -1.33
VPS35-201ENST00000299138 SLC45A4Q5BKX6 768 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 C12orf60Q5U649 245 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 JAMLQ86YT9 394 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 PLD3Q8IV08 490 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 DENND6AQ8IWF6 608 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 MLXIPQ9HAP2 919 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 AGPAT5Q9NUQ2 364 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 LGALS13Q9UHV8 139 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 RWDD3Q9Y3V2 267 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 NDUFB9Q9Y6M9 179 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 PLIN4Q96Q06 1357 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 NFIBO00712 420 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 SNX3O60493 162 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 PDE5AO76074 875 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 CALB2P22676 271 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 SOX5P35711 763 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 RAD23BP54727 409 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 GPC5P78333 572 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 MCL1Q07820 350 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 ZCWPW2Q504Y3 356 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 EXOC8Q8IYI6 725 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 SERPINI1Q99574 410 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 MRPL47Q9HD33 250 aaKnown RBP6.77□□□□□ -1.33
VPS35-201ENST00000299138 NDE1Q9NXR1 346 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 FRMPD4Q14CM0 1322 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 LRP6O75581 1613 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 SETD1BQ9UPS6 1966 aaKnown RBP6.77□□□□□ -1.33
VPS35-201ENST00000299138 H0Y626 953 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 SNUPNO95149 360 aaKnown RBP6.77□□□□□ -1.33
VPS35-201ENST00000299138 FGGP02679 453 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 UCHL3P15374 230 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 PSEN1P49768 467 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 COASYQ13057 564 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 ANGPTL8Q6UXH0 198 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 TPTE2Q6XPS3 522 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.77□□□□□ -1.33
VPS35-201ENST00000299138 ZC3H15Q8WU90 426 aaKnown RBP6.77□□□□□ -1.33
VPS35-201ENST00000299138 LRMDAQ9H2I8 198 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 KIAA1586Q9HCI6 787 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 SORBS3O60504 671 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 ZBED4O75132 1171 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 PDE9AO76083 593 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 MFAP3P55082 362 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 CHRNDQ07001 517 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 LAMC2Q13753 1193 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 HABP4Q5JVS0 413 aaKnown RBP6.76□□□□□ -1.33
VPS35-201ENST00000299138 NSMCE1Q8WV22 266 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 OTULINQ96BN8 352 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 RBM41Q96IZ5 413 aaKnown RBP6.76□□□□□ -1.33
VPS35-201ENST00000299138 CNBD2Q96M20 576 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 UPF3AQ9H1J1 476 aaKnown RBP6.76□□□□□ -1.33
VPS35-201ENST00000299138 KIF17Q9P2E2 1029 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 STX8Q9UNK0 236 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 PTPN22Q9Y2R2 807 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 STARD13Q9Y3M8 1113 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 TRAFD1O14545 582 aaPredicted RBP6.76□□□□□ -1.33
VPS35-201ENST00000299138 ZSCAN9O15535 394 aaPredicted RBP6.76□□□□□ -1.33
VPS35-201ENST00000299138 EXOC3O60645 756 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 CSDE1O75534 798 aaKnown RBP6.76□□□□□ -1.33
VPS35-201ENST00000299138 TOM1L1O75674 476 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 GLI1P08151 1106 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 ATF2P15336 505 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms