RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 RAD51CO43502 376 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 CDH3P22223 829 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 SARSP49591 514 aaKnown RBP12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 CHI3L2Q15782 390 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 AIFM3Q96NN9 605 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 PSMC3IPQ9P2W1 217 aaPredicted RBP12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 MXI1P50539 228 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 C1orf228Q6PIY5 440 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 ZNF556Q9HAH1 456 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 MAD2L2Q9UI95 211 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 TTC26A0AVF1 554 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 FAM25AB3EWG3 89 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 FAM25CB3EWG5 89 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 FAM25GB3EWG6 89 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 ETS2P15036 469 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 PAMP19021 973 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 DNAJC3Q13217 504 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 BARGINQ6ZT62 677 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 RMND5BQ96G75 393 aaPredicted RBP12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 FUT8Q9BYC5 575 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 SARS2Q9NP81 518 aaKnown RBP12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 SERPINB13Q9UIV8 391 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 MIF4GDA9UHW6 222 aaKnown RBP12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 PGM3O95394 542 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 ITGA6P23229 1130 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 GATAD2AQ86YP4 633 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 EPS8L3Q8TE67 593 aaKnown RBP12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 IARS2Q9NSE4 1012 aaKnown RBP12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 CCDC189A1A4V9 331 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 PRLP01236 227 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 CCNE1P24864 410 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 NFKBIAP25963 317 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 TYK2P29597 1187 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 C12orf60Q5U649 245 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 EML4Q9HC35 981 aaKnown RBP12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 ATP5JP18859 108 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 SNAP25P60880 206 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 CHKBQ9Y259 395 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 TRAF2Q12933 501 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 STAT4Q14765 748 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 ZSWIM7Q19AV6 140 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 RWDD4Q6NW29 188 aaKnown RBP12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 CCSER1Q9C0I3 900 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 ARIH2O95376 493 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 ADAMTS2O95450 1211 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 RASGRF1Q13972 1273 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 TAF5Q15542 800 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 ITM2BQ9Y287 266 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 PRAG1Q86YV5 1406 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 ATP12AP54707 1039 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 LRRC63Q05C16 580 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 DHX34Q14147 1143 aaKnown RBP12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 TSPAN18Q96SJ8 248 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 SLC52A1Q9NWF4 448 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 LOC100653049A0A140TA62 436 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 KRT34O76011 436 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 ZNF23P17027 643 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 ROR1Q01973 937 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 UNC5CLQ8IV45 518 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 CPXCR1Q8N123 301 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 SENP1Q9P0U3 644 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 LRPAP1P30533 357 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 TNKSO95271 1327 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 TTLL13PA6NNM8 815 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 ALOX15P16050 662 aaPredicted RBP12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 ARPC4P59998 168 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 RBM41Q96IZ5 413 aaKnown RBP12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 ADPGKQ9BRR6 497 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 ARHGEF11O15085 1522 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 IFNA8P32881 189 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 FLT3P36888 993 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 KBTBD2Q8IY47 623 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 KLF6Q99612 283 aaPredicted RBP12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 SERHL2Q9H4I8 314 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 SERHLQ9NQF3 203 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 CNOT8Q9UFF9 292 aaKnown RBP12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 TSPAN4O14817 238 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 TAF5LO75529 589 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 TFAMQ00059 246 aaKnown RBP12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 RALGDSQ12967 914 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 KIAA1755Q5JYT7 1200 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 HPS1Q92902 700 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 DENND2AQ9ULE3 1009 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 POLD3Q15054 466 aaPredicted RBP12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 NFIL3Q16649 462 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 RBBP8NLQ8NC74 664 aaPredicted RBP12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 ULK4Q96C45 1275 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 SETDB2Q96T68 719 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 EPB41L4AQ9HCS5 686 aaPredicted RBP12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 IMPAD1Q9NX62 359 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 ABCC4O15439 1325 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 SERPINB5P36952 375 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 TAF8Q7Z7C8 310 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 CROCCP3Q8IVE0 287 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 HEY2Q9UBP5 337 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 GAP43P17677 238 aa12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 ALDH5A1P51649 535 aaPredicted RBP12.35□□□□□ -0.43
SHROOM3-201ENST00000296043 ZFYVE9O95405 1425 aa12.34□□□□□ -0.43
SHROOM3-201ENST00000296043 VIL1P09327 827 aaKnown RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms