RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 TRIM7Q9C029 511 aa19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 CNOT8Q9UFF9 292 aaKnown RBP19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 ARID2Q68CP9 1835 aa19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 LRRIQ4A6NIV6 560 aa19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 HMGB1P1B2RPK0 211 aaPredicted RBP19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 GARTP22102 1010 aa19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 XKR3Q5GH77 459 aa19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 ACAD10Q6JQN1 1059 aa19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 ASAP3Q8TDY4 903 aa19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 CPA5Q8WXQ8 436 aa19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 CDHR1Q96JP9 859 aa19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 HAPLN2Q9GZV7 340 aa19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 WNT8AQ9H1J5 351 aa19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 GTF3C4Q9UKN8 822 aa19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 PTPN22Q9Y2R2 807 aa19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 PTPRJQ12913 1337 aa19.68■□□□□ 0.74
SHKBP1-201ENST00000291842 PHF2O75151 1096 aa19.68■□□□□ 0.74
SHKBP1-201ENST00000291842 MTA2O94776 668 aa19.68■□□□□ 0.74
SHKBP1-201ENST00000291842 GTF2H1P32780 548 aa19.68■□□□□ 0.74
SHKBP1-201ENST00000291842 SEZ6Q53EL9 994 aa19.68■□□□□ 0.74
SHKBP1-201ENST00000291842 ZBTB41Q5SVQ8 909 aa19.68■□□□□ 0.74
SHKBP1-201ENST00000291842 ANKRD35Q8N283 1001 aa19.68■□□□□ 0.74
SHKBP1-201ENST00000291842 C1orf112Q9NSG2 853 aa19.68■□□□□ 0.74
SHKBP1-201ENST00000291842 KCNJ1P48048 391 aa19.68■□□□□ 0.74
SHKBP1-201ENST00000291842 BIRC3Q13489 604 aa19.68■□□□□ 0.74
SHKBP1-201ENST00000291842 CCDC137Q6PK04 289 aaKnown RBP19.68■□□□□ 0.74
SHKBP1-201ENST00000291842 FBXO25Q8TCJ0 367 aa19.68■□□□□ 0.74
SHKBP1-201ENST00000291842 FNBP1Q96RU3 617 aa19.68■□□□□ 0.74
SHKBP1-201ENST00000291842 ZNF302Q9NR11 478 aa19.68■□□□□ 0.74
SHKBP1-201ENST00000291842 ZDHHC18Q9NUE0 388 aa19.68■□□□□ 0.74
SHKBP1-201ENST00000291842 MYH9P35579 1960 aaKnown RBP19.67■□□□□ 0.74
SHKBP1-201ENST00000291842 KIAA0391O15091 583 aaKnown RBP19.67■□□□□ 0.74
SHKBP1-201ENST00000291842 EXTL3O43909 919 aa19.67■□□□□ 0.74
SHKBP1-201ENST00000291842 PTGIRP43119 386 aa19.67■□□□□ 0.74
SHKBP1-201ENST00000291842 STRN3Q13033 797 aa19.67■□□□□ 0.74
SHKBP1-201ENST00000291842 MTMR3Q13615 1198 aa19.67■□□□□ 0.74
SHKBP1-201ENST00000291842 DHX34Q14147 1143 aaKnown RBP19.67■□□□□ 0.74
SHKBP1-201ENST00000291842 STXBP2Q15833 593 aa19.67■□□□□ 0.74
SHKBP1-201ENST00000291842 CLEC16AQ2KHT3 1053 aa19.67■□□□□ 0.74
SHKBP1-201ENST00000291842 DAB2IPQ5VWQ8 1189 aa19.67■□□□□ 0.74
SHKBP1-201ENST00000291842 TDRD10Q5VZ19 366 aaKnown RBP19.67■□□□□ 0.74
SHKBP1-201ENST00000291842 APOBEC3FQ8IUX4 373 aaKnown RBP19.67■□□□□ 0.74
SHKBP1-201ENST00000291842 HOXC10Q9NYD6 342 aa19.67■□□□□ 0.74
SHKBP1-201ENST00000291842 ANKFY1Q9P2R3 1169 aa19.67■□□□□ 0.74
SHKBP1-201ENST00000291842 DCDC2CA8MYV0 355 aa19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 CTNNA2P26232 953 aa19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 LSP1P33241 339 aa19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 RTP1P59025 263 aa19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 ANAPC7Q9UJX3 599 aa19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 AGO2Q9UKV8 859 aaKnown RBP19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 AFG3L2Q9Y4W6 797 aa19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 FAM187AA6NFU0 413 aa19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 ATP2A1O14983 1001 aa19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 HLA-DRAP01903 254 aa19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 RARAP10276 462 aa19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 HARSP12081 509 aaKnown RBP19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 GLRA2P23416 452 aa19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 PIK3CAP42336 1068 aa19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 RPL21P46778 160 aaKnown RBP19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 SEC24CP53992 1094 aa19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 GCNT1Q02742 428 aa19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 PPP2R5EQ16537 467 aa19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 ODF2Q5BJF6 829 aa19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 TREML2Q5T2D2 321 aa19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 SCARA3Q6AZY7 606 aa19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 PSPC1Q8WXF1 523 aaKnown RBP19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 CNKSR2Q8WXI2 1034 aa19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 TARS2Q9BW92 718 aaKnown RBP19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 PCDHA3Q9Y5H8 950 aa19.66■□□□□ 0.74
SHKBP1-201ENST00000291842 BRCA1P38398 1863 aaKnown RBP19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 NDUFAB1O14561 156 aa19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 OATP04181 439 aa19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 EDN1P05305 212 aa19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 CFHP08603 1231 aa19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 CHRNA3P32297 505 aa19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 HIRAP54198 1017 aaPredicted RBP19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 KRT71Q3SY84 523 aa19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 UBAP2Q5T6F2 1119 aaKnown RBP19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 ZDHHC24Q6UX98 284 aa19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 C15orf39Q6ZRI6 1047 aa19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 SLC13A5Q86YT5 568 aaPredicted RBP19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 CCDC105Q8IYK2 499 aa19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 DEPTORQ8TB45 409 aa19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 UVRAGQ9P2Y5 699 aa19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 FEZ2Q9UHY8 353 aaPredicted RBP19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 NOVA2Q9UNW9 492 aaKnown RBP19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 K7ERI5 159 aa19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 CLDN3O15551 220 aa19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 PPFIA2O75334 1257 aa19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 SHBGP04278 402 aa19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 RRM1P23921 792 aa19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 MAPK4P31152 587 aa19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 MDH1P40925 334 aaKnown RBP19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 IFFO1Q0D2I5 559 aa19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 WDR44Q5JSH3 913 aa19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 CRELD2Q6UXH1 353 aaPredicted RBP19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 EEPD1Q7L9B9 569 aa19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 PASD1Q8IV76 773 aa19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 GRHL1Q9NZI5 618 aa19.65■□□□□ 0.74
SHKBP1-201ENST00000291842 RASAL2Q9UJF2 1139 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms