RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 CDH6P55285 790 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 LRRC63Q05C16 580 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 ALKBH5Q6P6C2 394 aaKnown RBP11.97□□□□□ -0.49
PTPN4-201ENST00000263708 DYNLL2Q96FJ2 89 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 C11orf70Q9BRQ4 267 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 TMEM191CA6NGB0 347 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 SLC16A4O15374 487 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 NFICP08651 508 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 ICE2Q659A1 982 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 ENO3P13929 434 aaPredicted RBP11.97□□□□□ -0.49
PTPN4-201ENST00000263708 CYFIP1Q7L576 1253 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 GALNT4Q8N4A0 578 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 ZNF496Q96IT1 587 aaPredicted RBP11.97□□□□□ -0.49
PTPN4-201ENST00000263708 RNF26Q9BY78 433 aaPredicted RBP11.97□□□□□ -0.49
PTPN4-201ENST00000263708 QTRT2Q9H974 415 aaKnown RBP11.97□□□□□ -0.49
PTPN4-201ENST00000263708 ADAMTS1Q9UHI8 967 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 LRRC14Q15048 493 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 IFNEQ86WN2 208 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 DHX36Q9H2U1 1008 aaKnown RBP11.97□□□□□ -0.49
PTPN4-201ENST00000263708 ARHGEF38Q9NXL2 777 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 BLOC1S6Q9UL45 172 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 CCDC22O60826 627 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 HPGDP15428 266 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 GFPT1Q06210 699 aaPredicted RBP11.97□□□□□ -0.49
PTPN4-201ENST00000263708 CDC16Q13042 620 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 PTRHD1Q6GMV3 140 aaKnown RBP11.97□□□□□ -0.49
PTPN4-201ENST00000263708 FAM117BQ6P1L5 589 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 CNBD2Q96M20 576 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 SEPT5Q99719 369 aaPredicted RBP11.97□□□□□ -0.49
PTPN4-201ENST00000263708 DDX56Q9NY93 547 aaKnown RBP11.97□□□□□ -0.49
PTPN4-201ENST00000263708 RPS6KB2Q9UBS0 482 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 ADGBQ8N7X0 1667 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 LINC00854A0A1B0GVQ3 168 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 FAM83BQ5T0W9 1011 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.97□□□□□ -0.49
PTPN4-201ENST00000263708 TLK2Q86UE8 772 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 ANKMY2Q8IV38 441 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 UXS1Q8NBZ7 420 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 TMC2Q8TDI7 906 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 C19orf60Q96EN9 201 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 REXO4Q9GZR2 422 aaKnown RBP11.97□□□□□ -0.49
PTPN4-201ENST00000263708 SPRTNQ9H040 489 aaPredicted RBP11.97□□□□□ -0.49
PTPN4-201ENST00000263708 POLR3FQ9H1D9 316 aaPredicted RBP11.97□□□□□ -0.49
PTPN4-201ENST00000263708 GID8Q9NWU2 228 aa11.97□□□□□ -0.49
PTPN4-201ENST00000263708 KIF28PB7ZC32 967 aa11.96□□□□□ -0.49
PTPN4-201ENST00000263708 HOXB7P09629 217 aa11.96□□□□□ -0.49
PTPN4-201ENST00000263708 TBC1D23Q9NUY8 699 aa11.96□□□□□ -0.49
PTPN4-201ENST00000263708 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.96□□□□□ -0.49
PTPN4-201ENST00000263708 ZHX2Q9Y6X8 837 aa11.96□□□□□ -0.49
PTPN4-201ENST00000263708 TRADDQ15628 312 aa11.96□□□□□ -0.49
PTPN4-201ENST00000263708 SNRNP48Q6IEG0 339 aaKnown RBP11.96□□□□□ -0.49
PTPN4-201ENST00000263708 PID1Q7Z2X4 250 aa11.96□□□□□ -0.49
PTPN4-201ENST00000263708 IMPAD1Q9NX62 359 aa11.96□□□□□ -0.49
PTPN4-201ENST00000263708 M0R3G1 203 aa11.96□□□□□ -0.49
PTPN4-201ENST00000263708 PGM1P36871 562 aa11.96□□□□□ -0.49
PTPN4-201ENST00000263708 PRPF18Q99633 342 aaKnown RBP11.96□□□□□ -0.49
PTPN4-201ENST00000263708 MRPL4Q9BYD3 311 aaKnown RBP11.96□□□□□ -0.49
PTPN4-201ENST00000263708 SCN3BQ9NY72 215 aa11.96□□□□□ -0.49
PTPN4-201ENST00000263708 C4BPBP20851 252 aa11.96□□□□□ -0.49
PTPN4-201ENST00000263708 NT5DC4Q86YG4 428 aa11.96□□□□□ -0.49
PTPN4-201ENST00000263708 SHCBP1Q8NEM2 672 aa11.96□□□□□ -0.49
PTPN4-201ENST00000263708 SH3GL1Q99961 368 aa11.96□□□□□ -0.49
PTPN4-201ENST00000263708 C20orf96Q9NUD7 363 aaPredicted RBP11.96□□□□□ -0.49
PTPN4-201ENST00000263708 PYCARDQ9ULZ3 195 aa11.96□□□□□ -0.49
PTPN4-201ENST00000263708 TRIM25Q14258 630 aaKnown RBP11.96□□□□□ -0.49
PTPN4-201ENST00000263708 EME1Q96AY2 570 aa11.96□□□□□ -0.49
PTPN4-201ENST00000263708 RAVER2Q9HCJ3 691 aaKnown RBP11.96□□□□□ -0.49
PTPN4-201ENST00000263708 NBPF26B4DH59 902 aa11.96□□□□□ -0.5
PTPN4-201ENST00000263708 hCG_1984214I3L0E3 225 aa11.96□□□□□ -0.5
PTPN4-201ENST00000263708 PGK2P07205 417 aa11.96□□□□□ -0.5
PTPN4-201ENST00000263708 ZBED6P86452 979 aa11.96□□□□□ -0.5
PTPN4-201ENST00000263708 ZNF713Q8N859 430 aaPredicted RBP11.96□□□□□ -0.5
PTPN4-201ENST00000263708 MRPL39Q9NYK5 338 aaKnown RBP11.96□□□□□ -0.5
PTPN4-201ENST00000263708 ZNF211Q13398 564 aaPredicted RBP11.96□□□□□ -0.5
PTPN4-201ENST00000263708 PTPRN2Q92932 1015 aa11.96□□□□□ -0.5
PTPN4-201ENST00000263708 SIKE1Q9BRV8 207 aa11.96□□□□□ -0.5
PTPN4-201ENST00000263708 DYRK3O43781 588 aa11.96□□□□□ -0.5
PTPN4-201ENST00000263708 CLASP2O75122 1294 aaKnown RBP11.96□□□□□ -0.5
PTPN4-201ENST00000263708 ARSEP51690 589 aa11.96□□□□□ -0.5
PTPN4-201ENST00000263708 BTKQ06187 659 aa11.96□□□□□ -0.5
PTPN4-201ENST00000263708 SLC25A24Q6NUK1 477 aa11.96□□□□□ -0.5
PTPN4-201ENST00000263708 TMEM154Q6P9G4 183 aa11.96□□□□□ -0.5
PTPN4-201ENST00000263708 GSPT2Q8IYD1 628 aaKnown RBP11.96□□□□□ -0.5
PTPN4-201ENST00000263708 TSPAN17Q96FV3 270 aa11.96□□□□□ -0.5
PTPN4-201ENST00000263708 STN1Q9H668 368 aaKnown RBP11.96□□□□□ -0.5
PTPN4-201ENST00000263708 CDYLQ9Y232 598 aa11.96□□□□□ -0.5
PTPN4-201ENST00000263708 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.96□□□□□ -0.5
PTPN4-201ENST00000263708 KRT16P08779 473 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 SERPINB3P29508 390 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 GUCY1A2P33402 732 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 SESN2P58004 480 aaPredicted RBP11.95□□□□□ -0.5
PTPN4-201ENST00000263708 ABCB6Q9NP58 842 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 KLHL11Q9NVR0 708 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 MMP1P03956 469 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 CIAPIN1Q6FI81 312 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 MARCH10Q8NA82 808 aaPredicted RBP11.95□□□□□ -0.5
PTPN4-201ENST00000263708 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.95□□□□□ -0.5
PTPN4-201ENST00000263708 ETNK1Q9HBU6 452 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 KBTBD13C9JR72 458 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 ZNF438Q7Z4V0 828 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms