RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 PFASO15067 1338 aa22.8■■□□□ 1.24
TRIM28-201ENST00000253024 RIPK2O43353 540 aa22.8■■□□□ 1.24
TRIM28-201ENST00000253024 ECEL1O95672 775 aa22.8■■□□□ 1.24
TRIM28-201ENST00000253024 DRD4P21917 467 aa22.8■■□□□ 1.24
TRIM28-201ENST00000253024 ANXA13P27216 316 aa22.8■■□□□ 1.24
TRIM28-201ENST00000253024 SMTNP53814 917 aa22.8■■□□□ 1.24
TRIM28-201ENST00000253024 AGBL2Q5U5Z8 902 aa22.8■■□□□ 1.24
TRIM28-201ENST00000253024 STYK1Q6J9G0 422 aa22.8■■□□□ 1.24
TRIM28-201ENST00000253024 ADAM7Q9H2U9 754 aa22.8■■□□□ 1.24
TRIM28-201ENST00000253024 ADCY8P40145 1251 aa22.8■■□□□ 1.24
TRIM28-201ENST00000253024 HSD17B4P51659 736 aa22.8■■□□□ 1.24
TRIM28-201ENST00000253024 SLC9A9Q8IVB4 645 aa22.8■■□□□ 1.24
TRIM28-201ENST00000253024 C10orf88Q9H8K7 445 aa22.8■■□□□ 1.24
TRIM28-201ENST00000253024 KRT10P13645 584 aa22.79■■□□□ 1.24
TRIM28-201ENST00000253024 TCF4P15884 667 aa22.79■■□□□ 1.24
TRIM28-201ENST00000253024 GTF2BQ00403 316 aa22.79■■□□□ 1.24
TRIM28-201ENST00000253024 DHX34Q14147 1143 aaKnown RBP22.79■■□□□ 1.24
TRIM28-201ENST00000253024 TXLNGYQ9BZA5 131 aa22.79■■□□□ 1.24
TRIM28-201ENST00000253024 EFCC1Q9HA90 598 aa22.79■■□□□ 1.24
TRIM28-201ENST00000253024 NLRX1Q86UT6 975 aa22.79■■□□□ 1.24
TRIM28-201ENST00000253024 IPO4Q8TEX9 1081 aaKnown RBP22.79■■□□□ 1.24
TRIM28-201ENST00000253024 TBC1D31Q96DN5 1066 aa22.79■■□□□ 1.24
TRIM28-201ENST00000253024 PDCD2LQ9BRP1 358 aa22.79■■□□□ 1.24
TRIM28-201ENST00000253024 UMODL1Q5DID0 1318 aa22.79■■□□□ 1.24
TRIM28-201ENST00000253024 BHMG1C9JSJ3 638 aaPredicted RBP22.78■■□□□ 1.24
TRIM28-201ENST00000253024 CPP00450 1065 aa22.78■■□□□ 1.24
TRIM28-201ENST00000253024 PSMC5P62195 406 aa22.78■■□□□ 1.24
TRIM28-201ENST00000253024 EEPD1Q7L9B9 569 aa22.78■■□□□ 1.24
TRIM28-201ENST00000253024 SHC3Q92529 594 aa22.78■■□□□ 1.24
TRIM28-201ENST00000253024 ZNF516Q92618 1163 aa22.78■■□□□ 1.24
TRIM28-201ENST00000253024 HVCN1Q96D96 273 aa22.78■■□□□ 1.24
TRIM28-201ENST00000253024 GSTTP1A0A1W2PQM5 241 aa22.78■■□□□ 1.24
TRIM28-201ENST00000253024 FAM187AA6NFU0 413 aa22.78■■□□□ 1.24
TRIM28-201ENST00000253024 MIF4GDA9UHW6 222 aaKnown RBP22.78■■□□□ 1.24
TRIM28-201ENST00000253024 RALAP11233 206 aa22.78■■□□□ 1.24
TRIM28-201ENST00000253024 CDR2Q01850 454 aa22.78■■□□□ 1.24
TRIM28-201ENST00000253024 TMEM270Q6UE05 265 aa22.78■■□□□ 1.24
TRIM28-201ENST00000253024 DLK2Q6UY11 383 aa22.78■■□□□ 1.24
TRIM28-201ENST00000253024 ANKS1BQ7Z6G8 1248 aa22.78■■□□□ 1.24
TRIM28-201ENST00000253024 KCND2Q9NZV8 630 aa22.78■■□□□ 1.24
TRIM28-201ENST00000253024 UBIAD1Q9Y5Z9 338 aa22.78■■□□□ 1.24
TRIM28-201ENST00000253024 PTPRJQ12913 1337 aa22.78■■□□□ 1.24
TRIM28-201ENST00000253024 A6NNZ2 444 aa22.77■■□□□ 1.24
TRIM28-201ENST00000253024 ZSCAN5DPP0CG00 497 aa22.77■■□□□ 1.24
TRIM28-201ENST00000253024 ITGA8P53708 1063 aa22.77■■□□□ 1.24
TRIM28-201ENST00000253024 NLRP11P59045 1033 aaKnown RBP22.77■■□□□ 1.24
TRIM28-201ENST00000253024 CXCL9Q07325 125 aa22.77■■□□□ 1.24
TRIM28-201ENST00000253024 TUBB8Q3ZCM7 444 aa22.77■■□□□ 1.24
TRIM28-201ENST00000253024 C11orf63Q6NUN7 778 aa22.77■■□□□ 1.24
TRIM28-201ENST00000253024 TLCD1Q96CP7 247 aa22.77■■□□□ 1.24
TRIM28-201ENST00000253024 FGFR1OP2Q9NVK5 253 aa22.77■■□□□ 1.24
TRIM28-201ENST00000253024 ATAD5Q96QE3 1844 aa22.77■■□□□ 1.24
TRIM28-201ENST00000253024 LRRIQ4A6NIV6 560 aa22.77■■□□□ 1.24
TRIM28-201ENST00000253024 CTNNA2P26232 953 aa22.77■■□□□ 1.24
TRIM28-201ENST00000253024 FSTL1Q12841 308 aa22.77■■□□□ 1.24
TRIM28-201ENST00000253024 AUHQ13825 339 aaKnown RBP22.77■■□□□ 1.24
TRIM28-201ENST00000253024 SIX1Q15475 284 aaPredicted RBP22.77■■□□□ 1.24
TRIM28-201ENST00000253024 ANKRD20A8PQ5CZ79 823 aa22.77■■□□□ 1.24
TRIM28-201ENST00000253024 C6orf89Q6UWU4 347 aa22.77■■□□□ 1.24
TRIM28-201ENST00000253024 GSTA5Q7RTV2 222 aa22.77■■□□□ 1.24
TRIM28-201ENST00000253024 PNMA8AQ86V59 439 aaPredicted RBP22.77■■□□□ 1.24
TRIM28-201ENST00000253024 CDR2LQ86X02 465 aaPredicted RBP22.77■■□□□ 1.24
TRIM28-201ENST00000253024 ZNF526Q8TF50 670 aaPredicted RBP22.77■■□□□ 1.24
TRIM28-201ENST00000253024 TCP11Q8WWU5 503 aa22.77■■□□□ 1.24
TRIM28-201ENST00000253024 RNF146Q9NTX7 359 aa22.77■■□□□ 1.24
TRIM28-201ENST00000253024 UBE4BO95155 1302 aa22.77■■□□□ 1.24
TRIM28-201ENST00000253024 PASKQ96RG2 1323 aa22.77■■□□□ 1.24
TRIM28-201ENST00000253024 QSER1Q2KHR3 1735 aa22.77■■□□□ 1.24
TRIM28-201ENST00000253024 C10orf71Q711Q0 1435 aa22.77■■□□□ 1.23
TRIM28-201ENST00000253024 WDR64B1ANS9 1081 aa22.77■■□□□ 1.23
TRIM28-201ENST00000253024 ATF7P17544 494 aaPredicted RBP22.77■■□□□ 1.23
TRIM28-201ENST00000253024 SCTRP47872 440 aa22.77■■□□□ 1.23
TRIM28-201ENST00000253024 CDR1P51861 262 aa22.77■■□□□ 1.23
TRIM28-201ENST00000253024 ADCY2Q08462 1091 aa22.77■■□□□ 1.23
TRIM28-201ENST00000253024 NFIL3Q16649 462 aa22.77■■□□□ 1.23
TRIM28-201ENST00000253024 ERMARDQ5T6L9 678 aa22.77■■□□□ 1.23
TRIM28-201ENST00000253024 CCDC60Q8IWA6 550 aaPredicted RBP22.77■■□□□ 1.23
TRIM28-201ENST00000253024 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP22.77■■□□□ 1.23
TRIM28-201ENST00000253024 FAM129AQ9BZQ8 928 aa22.77■■□□□ 1.23
TRIM28-201ENST00000253024 KLC4Q9NSK0 619 aa22.77■■□□□ 1.23
TRIM28-201ENST00000253024 GJA3Q9Y6H8 435 aa22.77■■□□□ 1.23
TRIM28-201ENST00000253024 ETS1P14921 441 aa22.76■■□□□ 1.23
TRIM28-201ENST00000253024 DPEP1P16444 411 aa22.76■■□□□ 1.23
TRIM28-201ENST00000253024 TRAF1Q13077 416 aa22.76■■□□□ 1.23
TRIM28-201ENST00000253024 SYCP2LQ5T4T6 812 aa22.76■■□□□ 1.23
TRIM28-201ENST00000253024 CNPY4Q8N129 248 aa22.76■■□□□ 1.23
TRIM28-201ENST00000253024 ARHGEF2Q92974 986 aaKnown RBP22.76■■□□□ 1.23
TRIM28-201ENST00000253024 FNBP1Q96RU3 617 aa22.76■■□□□ 1.23
TRIM28-201ENST00000253024 WNT8AQ9H1J5 351 aa22.76■■□□□ 1.23
TRIM28-201ENST00000253024 ABCF3Q9NUQ8 709 aa22.76■■□□□ 1.23
TRIM28-201ENST00000253024 EPB41L3Q9Y2J2 1087 aaPredicted RBP22.76■■□□□ 1.23
TRIM28-201ENST00000253024 CEP350Q5VT06 3117 aa22.76■■□□□ 1.23
TRIM28-201ENST00000253024 PCNX4Q63HM2 1172 aa22.76■■□□□ 1.23
TRIM28-201ENST00000253024 TBC1D1Q86TI0 1168 aaPredicted RBP22.76■■□□□ 1.23
TRIM28-201ENST00000253024 EXOC3L1Q86VI1 746 aa22.76■■□□□ 1.23
TRIM28-201ENST00000253024 CYP4X1Q8N118 509 aa22.76■■□□□ 1.23
TRIM28-201ENST00000253024 GLIS1Q8NBF1 620 aa22.76■■□□□ 1.23
TRIM28-201ENST00000253024 CD101Q93033 1021 aa22.76■■□□□ 1.23
TRIM28-201ENST00000253024 PXMP2Q9NR77 195 aa22.76■■□□□ 1.23
TRIM28-201ENST00000253024 PCDHA3Q9Y5H8 950 aa22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms